miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11039 3' -61.5 NC_002794.1 + 95761 0.66 0.754699
Target:  5'- cGCgGGGCGGcggccGCgacGGCGGC-CGGGgCGAg -3'
miRNA:   3'- -CG-CCCGCC-----CGa--UCGCCGaGCUCaGCU- -5'
11039 3' -61.5 NC_002794.1 + 191878 0.66 0.754699
Target:  5'- gGCGGaGgGGGC-GGCGGaggCGGGaUCGGc -3'
miRNA:   3'- -CGCC-CgCCCGaUCGCCga-GCUC-AGCU- -5'
11039 3' -61.5 NC_002794.1 + 40476 0.66 0.754699
Target:  5'- uCGGGCGgcucaucgaacGGCcGGCGcucgccGCUCGAGUCa- -3'
miRNA:   3'- cGCCCGC-----------CCGaUCGC------CGAGCUCAGcu -5'
11039 3' -61.5 NC_002794.1 + 151229 0.66 0.754699
Target:  5'- uUGGGCcaGGGCUAcCGGCUCaccGUCGu -3'
miRNA:   3'- cGCCCG--CCCGAUcGCCGAGcu-CAGCu -5'
11039 3' -61.5 NC_002794.1 + 159584 0.66 0.749256
Target:  5'- gGCGGGCGGGgUccaccAG-GGUUCGAGacacaucaggucaccUCGGg -3'
miRNA:   3'- -CGCCCGCCCgA-----UCgCCGAGCUC---------------AGCU- -5'
11039 3' -61.5 NC_002794.1 + 143333 0.66 0.745608
Target:  5'- cGCGuGCucGGGC-AGCgGGCUCGGG-CGAu -3'
miRNA:   3'- -CGCcCG--CCCGaUCG-CCGAGCUCaGCU- -5'
11039 3' -61.5 NC_002794.1 + 56307 0.66 0.745608
Target:  5'- cGCGGucGCGGucGCUGGCGGC-CGuGgccggCGAc -3'
miRNA:   3'- -CGCC--CGCC--CGAUCGCCGaGCuCa----GCU- -5'
11039 3' -61.5 NC_002794.1 + 113146 0.66 0.736429
Target:  5'- -aGGGCGGGCgcgucagcgugUAGCGcGCgCGGG-CGGc -3'
miRNA:   3'- cgCCCGCCCG-----------AUCGC-CGaGCUCaGCU- -5'
11039 3' -61.5 NC_002794.1 + 126395 0.66 0.735506
Target:  5'- uGCGcGGCGGcGUgcGCGGCggUCGcgaucuggcugcuGGUCGAg -3'
miRNA:   3'- -CGC-CCGCC-CGauCGCCG--AGC-------------UCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 32872 0.66 0.734583
Target:  5'- gGCGGGCGgcGGCggcGGCGGCggcaucauggagCGgaaccAGUCGGg -3'
miRNA:   3'- -CGCCCGC--CCGa--UCGCCGa-----------GC-----UCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 100548 0.66 0.727169
Target:  5'- aGCGGGCGGcCUuccccGUGGC-CGAG-CGGc -3'
miRNA:   3'- -CGCCCGCCcGAu----CGCCGaGCUCaGCU- -5'
11039 3' -61.5 NC_002794.1 + 87133 0.66 0.727169
Target:  5'- cCGGGCGGGUgggGGUgcaGGCcgggCGGGUgGGg -3'
miRNA:   3'- cGCCCGCCCGa--UCG---CCGa---GCUCAgCU- -5'
11039 3' -61.5 NC_002794.1 + 87091 0.66 0.727169
Target:  5'- cCGGGCGGGUgggGGUgcaGGCcgggCGGGUgGGg -3'
miRNA:   3'- cGCCCGCCCGa--UCG---CCGa---GCUCAgCU- -5'
11039 3' -61.5 NC_002794.1 + 87175 0.66 0.727169
Target:  5'- cCGGGCGGGUgggGGUgcaGGCcgggCGGGUgGGg -3'
miRNA:   3'- cGCCCGCCCGa--UCG---CCGa---GCUCAgCU- -5'
11039 3' -61.5 NC_002794.1 + 87217 0.66 0.727169
Target:  5'- cCGGGCGGGUgggGGUgcaGGCcgggCGGGUgGGg -3'
miRNA:   3'- cGCCCGCCCGa--UCG---CCGa---GCUCAgCU- -5'
11039 3' -61.5 NC_002794.1 + 126698 0.66 0.727169
Target:  5'- -aGGGagGGGCgccGCGGaCUCGGGgCGAg -3'
miRNA:   3'- cgCCCg-CCCGau-CGCC-GAGCUCaGCU- -5'
11039 3' -61.5 NC_002794.1 + 87259 0.66 0.727169
Target:  5'- cCGGGCGGGUgggGGUgcaGGCcgggCGGGUgGGg -3'
miRNA:   3'- cGCCCGCCCGa--UCG---CCGa---GCUCAgCU- -5'
11039 3' -61.5 NC_002794.1 + 181540 0.66 0.727169
Target:  5'- cGCcGGCGGGCcGGCGcuCUCG-GUCGc -3'
miRNA:   3'- -CGcCCGCCCGaUCGCc-GAGCuCAGCu -5'
11039 3' -61.5 NC_002794.1 + 125751 0.66 0.727169
Target:  5'- cGCGGGaCGgcGGCcGGCGGCUCGccacccGGcugCGAg -3'
miRNA:   3'- -CGCCC-GC--CCGaUCGCCGAGC------UCa--GCU- -5'
11039 3' -61.5 NC_002794.1 + 127358 0.66 0.717836
Target:  5'- cGCGgcGGCGGcGC-GGCcGCUCGuGUCGGc -3'
miRNA:   3'- -CGC--CCGCC-CGaUCGcCGAGCuCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.