miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11039 3' -61.5 NC_002794.1 + 127358 0.66 0.717836
Target:  5'- cGCGgcGGCGGcGC-GGCcGCUCGuGUCGGc -3'
miRNA:   3'- -CGC--CCGCC-CGaUCGcCGAGCuCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 105531 0.67 0.708438
Target:  5'- aGCGGaCGugagauccGGC-GGCGGCUCGGG-CGAa -3'
miRNA:   3'- -CGCCcGC--------CCGaUCGCCGAGCUCaGCU- -5'
11039 3' -61.5 NC_002794.1 + 180696 0.67 0.708438
Target:  5'- gGCGcccGGCGGGCggaccaUGGCUCGGGUUcaGAg -3'
miRNA:   3'- -CGC---CCGCCCGauc---GCCGAGCUCAG--CU- -5'
11039 3' -61.5 NC_002794.1 + 158003 0.67 0.708438
Target:  5'- aGCcGGUGGGgUGGCGGaucagCGAGaCGAa -3'
miRNA:   3'- -CGcCCGCCCgAUCGCCga---GCUCaGCU- -5'
11039 3' -61.5 NC_002794.1 + 179117 0.67 0.689477
Target:  5'- cGCGGucCGGGCgcGCGG-UCG-GUCGAu -3'
miRNA:   3'- -CGCCc-GCCCGauCGCCgAGCuCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 142224 0.67 0.670346
Target:  5'- gGCGGuGCGGGg-AGCGGCg-GAGgcggCGGu -3'
miRNA:   3'- -CGCC-CGCCCgaUCGCCGagCUCa---GCU- -5'
11039 3' -61.5 NC_002794.1 + 37760 0.67 0.670346
Target:  5'- gGCGGcGCcGGCgggAGCGGCcgUCGucGUCGGc -3'
miRNA:   3'- -CGCC-CGcCCGa--UCGCCG--AGCu-CAGCU- -5'
11039 3' -61.5 NC_002794.1 + 55209 0.67 0.660736
Target:  5'- gGCGcGGCGgaGGCcGGCGG-UCGAGcCGAc -3'
miRNA:   3'- -CGC-CCGC--CCGaUCGCCgAGCUCaGCU- -5'
11039 3' -61.5 NC_002794.1 + 143298 0.68 0.651105
Target:  5'- uCGGGCGGGUgcagcgcGGCGGgaUGgaAGUCGGu -3'
miRNA:   3'- cGCCCGCCCGa------UCGCCgaGC--UCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 86930 0.68 0.641461
Target:  5'- gGCGGGCaGGCggGGCGGgauccggCGAgcGUCGAc -3'
miRNA:   3'- -CGCCCGcCCGa-UCGCCga-----GCU--CAGCU- -5'
11039 3' -61.5 NC_002794.1 + 98926 0.68 0.641461
Target:  5'- aGCGGGCuGGGC--GCGGC-CGGGaaGGg -3'
miRNA:   3'- -CGCCCG-CCCGauCGCCGaGCUCagCU- -5'
11039 3' -61.5 NC_002794.1 + 141645 0.68 0.63181
Target:  5'- gGCcGGCGuGGCc-GCGGCcgccggCGGGUCGAg -3'
miRNA:   3'- -CGcCCGC-CCGauCGCCGa-----GCUCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 138688 0.68 0.628914
Target:  5'- gGCGGGUcgugaugcaaaugaGGGCggcGUGGaCUCGcGUCGAg -3'
miRNA:   3'- -CGCCCG--------------CCCGau-CGCC-GAGCuCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 31740 0.68 0.622159
Target:  5'- cCGGGCGGGCgaacgaAGCGG-UCGAuguacUCGAu -3'
miRNA:   3'- cGCCCGCCCGa-----UCGCCgAGCUc----AGCU- -5'
11039 3' -61.5 NC_002794.1 + 94032 0.68 0.622159
Target:  5'- cGCcGGCGGGCccgagAGCGGCggcggugCGGGggCGGc -3'
miRNA:   3'- -CGcCCGCCCGa----UCGCCGa------GCUCa-GCU- -5'
11039 3' -61.5 NC_002794.1 + 15005 0.68 0.622159
Target:  5'- uCGGGCGgucucGGCUGGCuGCUCGucGUCa- -3'
miRNA:   3'- cGCCCGC-----CCGAUCGcCGAGCu-CAGcu -5'
11039 3' -61.5 NC_002794.1 + 110614 0.68 0.613479
Target:  5'- aGCGGaGCGGGagccgcggcgccgcGGCGGCg-GGGUCGGg -3'
miRNA:   3'- -CGCC-CGCCCga------------UCGCCGagCUCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 159896 0.68 0.612515
Target:  5'- -aGGGCGGGgUAGCgaagGGUaggUGGGUCGGc -3'
miRNA:   3'- cgCCCGCCCgAUCG----CCGa--GCUCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 76792 0.68 0.611552
Target:  5'- cCGGGCGGGCgAGCGGCgaccacCGGaccggacGUCa- -3'
miRNA:   3'- cGCCCGCCCGaUCGCCGa-----GCU-------CAGcu -5'
11039 3' -61.5 NC_002794.1 + 36998 0.69 0.593273
Target:  5'- gGCGaGGCGgacccGGUagAGCGGCUCGGGccCGAu -3'
miRNA:   3'- -CGC-CCGC-----CCGa-UCGCCGAGCUCa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.