miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11039 3' -61.5 NC_002794.1 + 10638 0.73 0.343189
Target:  5'- aCGGGCGGGg-AGCGGCgCGAGccCGAc -3'
miRNA:   3'- cGCCCGCCCgaUCGCCGaGCUCa-GCU- -5'
11039 3' -61.5 NC_002794.1 + 15005 0.68 0.622159
Target:  5'- uCGGGCGgucucGGCUGGCuGCUCGucGUCa- -3'
miRNA:   3'- cGCCCGC-----CCGAUCGcCGAGCu-CAGcu -5'
11039 3' -61.5 NC_002794.1 + 31740 0.68 0.622159
Target:  5'- cCGGGCGGGCgaacgaAGCGG-UCGAuguacUCGAu -3'
miRNA:   3'- cGCCCGCCCGa-----UCGCCgAGCUc----AGCU- -5'
11039 3' -61.5 NC_002794.1 + 32872 0.66 0.734583
Target:  5'- gGCGGGCGgcGGCggcGGCGGCggcaucauggagCGgaaccAGUCGGg -3'
miRNA:   3'- -CGCCCGC--CCGa--UCGCCGa-----------GC-----UCAGCU- -5'
11039 3' -61.5 NC_002794.1 + 36998 0.69 0.593273
Target:  5'- gGCGaGGCGgacccGGUagAGCGGCUCGGGccCGAu -3'
miRNA:   3'- -CGC-CCGC-----CCGa-UCGCCGAGCUCa-GCU- -5'
11039 3' -61.5 NC_002794.1 + 37760 0.67 0.670346
Target:  5'- gGCGGcGCcGGCgggAGCGGCcgUCGucGUCGGc -3'
miRNA:   3'- -CGCC-CGcCCGa--UCGCCG--AGCu-CAGCU- -5'
11039 3' -61.5 NC_002794.1 + 40476 0.66 0.754699
Target:  5'- uCGGGCGgcucaucgaacGGCcGGCGcucgccGCUCGAGUCa- -3'
miRNA:   3'- cGCCCGC-----------CCGaUCGC------CGAGCUCAGcu -5'
11039 3' -61.5 NC_002794.1 + 44222 0.69 0.574132
Target:  5'- uCGGGCgccgaGGGCUcggugccgGGCGGCUCGGuGcCGGg -3'
miRNA:   3'- cGCCCG-----CCCGA--------UCGCCGAGCU-CaGCU- -5'
11039 3' -61.5 NC_002794.1 + 55209 0.67 0.660736
Target:  5'- gGCGcGGCGgaGGCcGGCGG-UCGAGcCGAc -3'
miRNA:   3'- -CGC-CCGC--CCGaUCGCCgAGCUCaGCU- -5'
11039 3' -61.5 NC_002794.1 + 55274 0.7 0.527009
Target:  5'- gGgGGGCGGcGgUGGCGGCgaCGAGggCGGc -3'
miRNA:   3'- -CgCCCGCC-CgAUCGCCGa-GCUCa-GCU- -5'
11039 3' -61.5 NC_002794.1 + 55312 0.72 0.388612
Target:  5'- uCGcGGCGGGCgcgGGCGGCUUccgaggacccgGGGUCGc -3'
miRNA:   3'- cGC-CCGCCCGa--UCGCCGAG-----------CUCAGCu -5'
11039 3' -61.5 NC_002794.1 + 56307 0.66 0.745608
Target:  5'- cGCGGucGCGGucGCUGGCGGC-CGuGgccggCGAc -3'
miRNA:   3'- -CGCC--CGCC--CGAUCGCCGaGCuCa----GCU- -5'
11039 3' -61.5 NC_002794.1 + 63996 0.69 0.58273
Target:  5'- aGCGGGCuccgucuGGGUccuGCGGCUggCGAuGUCGGa -3'
miRNA:   3'- -CGCCCG-------CCCGau-CGCCGA--GCU-CAGCU- -5'
11039 3' -61.5 NC_002794.1 + 76792 0.68 0.611552
Target:  5'- cCGGGCGGGCgAGCGGCgaccacCGGaccggacGUCa- -3'
miRNA:   3'- cGCCCGCCCGaUCGCCGa-----GCU-------CAGcu -5'
11039 3' -61.5 NC_002794.1 + 82042 0.66 0.717836
Target:  5'- cGUGGGC-GGC-GGCGGCggCGGcGUCGu -3'
miRNA:   3'- -CGCCCGcCCGaUCGCCGa-GCU-CAGCu -5'
11039 3' -61.5 NC_002794.1 + 86930 0.68 0.641461
Target:  5'- gGCGGGCaGGCggGGCGGgauccggCGAgcGUCGAc -3'
miRNA:   3'- -CGCCCGcCCGa-UCGCCga-----GCU--CAGCU- -5'
11039 3' -61.5 NC_002794.1 + 87091 0.66 0.727169
Target:  5'- cCGGGCGGGUgggGGUgcaGGCcgggCGGGUgGGg -3'
miRNA:   3'- cGCCCGCCCGa--UCG---CCGa---GCUCAgCU- -5'
11039 3' -61.5 NC_002794.1 + 87133 0.66 0.727169
Target:  5'- cCGGGCGGGUgggGGUgcaGGCcgggCGGGUgGGg -3'
miRNA:   3'- cGCCCGCCCGa--UCG---CCGa---GCUCAgCU- -5'
11039 3' -61.5 NC_002794.1 + 87175 0.66 0.727169
Target:  5'- cCGGGCGGGUgggGGUgcaGGCcgggCGGGUgGGg -3'
miRNA:   3'- cGCCCGCCCGa--UCG---CCGa---GCUCAgCU- -5'
11039 3' -61.5 NC_002794.1 + 87217 0.66 0.727169
Target:  5'- cCGGGCGGGUgggGGUgcaGGCcgggCGGGUgGGg -3'
miRNA:   3'- cGCCCGCCCGa--UCG---CCGa---GCUCAgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.