miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11039 5' -58.1 NC_002794.1 + 71055 0.66 0.867154
Target:  5'- -----cCCGGaAGCCGCCGcCGCa-GCa -3'
miRNA:   3'- uuauuuGGCC-UCGGCGGC-GCGagCGa -5'
11039 5' -58.1 NC_002794.1 + 81564 0.66 0.867154
Target:  5'- ----cGCCGccGCCGCCGCGC-CGg- -3'
miRNA:   3'- uuauuUGGCcuCGGCGGCGCGaGCga -5'
11039 5' -58.1 NC_002794.1 + 33666 0.66 0.867154
Target:  5'- cGUGcACUcGcGCuCGCUGCGCUCGCUg -3'
miRNA:   3'- uUAUuUGGcCuCG-GCGGCGCGAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 100297 0.66 0.867154
Target:  5'- ---cGGCUGGuGCCGCCucCGC-CGCUg -3'
miRNA:   3'- uuauUUGGCCuCGGCGGc-GCGaGCGA- -5'
11039 5' -58.1 NC_002794.1 + 154261 0.66 0.867154
Target:  5'- -uUGGACCGGGGucuggucccgaCCGCCGgCGCg-GCUc -3'
miRNA:   3'- uuAUUUGGCCUC-----------GGCGGC-GCGagCGA- -5'
11039 5' -58.1 NC_002794.1 + 37934 0.66 0.859723
Target:  5'- ----cGCCGcGGCCGCCcgugccucgGCGaCUCGCUc -3'
miRNA:   3'- uuauuUGGCcUCGGCGG---------CGC-GAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 114653 0.66 0.859723
Target:  5'- ----uGCCGGuGCUGuUCGCGCgCGCg -3'
miRNA:   3'- uuauuUGGCCuCGGC-GGCGCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 32605 0.66 0.859723
Target:  5'- --gGGGCCGGGGCCGgggaUCGgGCcCGCc -3'
miRNA:   3'- uuaUUUGGCCUCGGC----GGCgCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 19289 0.66 0.859723
Target:  5'- ---uGGCCuGGAGCCucGUCGCG-UCGCUg -3'
miRNA:   3'- uuauUUGG-CCUCGG--CGGCGCgAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 6532 0.66 0.859723
Target:  5'- uGAUGGACCGG-GCCGaCGCGgugUUGCg -3'
miRNA:   3'- -UUAUUUGGCCuCGGCgGCGCg--AGCGa -5'
11039 5' -58.1 NC_002794.1 + 154409 0.66 0.859723
Target:  5'- ----uGCCGGuGGCCa--GCGCUCGCa -3'
miRNA:   3'- uuauuUGGCC-UCGGcggCGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 187918 0.66 0.859723
Target:  5'- ----cGCCGGGccCCGCCGCGaccgUCGCg -3'
miRNA:   3'- uuauuUGGCCUc-GGCGGCGCg---AGCGa -5'
11039 5' -58.1 NC_002794.1 + 189901 0.66 0.859723
Target:  5'- ----cGCCGucagcGCCGCCGCGCgacCGCc -3'
miRNA:   3'- uuauuUGGCcu---CGGCGGCGCGa--GCGa -5'
11039 5' -58.1 NC_002794.1 + 195632 0.66 0.859723
Target:  5'- ---cGGCCGGcgacgacgAGCCGCaCGCaCUCGCc -3'
miRNA:   3'- uuauUUGGCC--------UCGGCG-GCGcGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 137936 0.66 0.859723
Target:  5'- cGAUGAGCUGGAggcaGCgGCggaUGCGUUCGCc -3'
miRNA:   3'- -UUAUUUGGCCU----CGgCG---GCGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 47742 0.66 0.859723
Target:  5'- ----cGCCGGguccacguGGCgGCCGUGgUCGCg -3'
miRNA:   3'- uuauuUGGCC--------UCGgCGGCGCgAGCGa -5'
11039 5' -58.1 NC_002794.1 + 181679 0.66 0.859723
Target:  5'- uGGUGuGCgCGGA-CCGCCGCGcCUCGg- -3'
miRNA:   3'- -UUAUuUG-GCCUcGGCGGCGC-GAGCga -5'
11039 5' -58.1 NC_002794.1 + 117417 0.66 0.858969
Target:  5'- ---cGACCcgcugcaGGAGCUGCCGCGaggCGUUg -3'
miRNA:   3'- uuauUUGG-------CCUCGGCGGCGCga-GCGA- -5'
11039 5' -58.1 NC_002794.1 + 149278 0.66 0.852094
Target:  5'- ----cGCCGGcGgCGCgGCGgCUCGCUc -3'
miRNA:   3'- uuauuUGGCCuCgGCGgCGC-GAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 48623 0.66 0.852094
Target:  5'- --cAGACgCGGAGCgGCCGUcgggGCcCGCg -3'
miRNA:   3'- uuaUUUG-GCCUCGgCGGCG----CGaGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.