miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11039 5' -58.1 NC_002794.1 + 110617 0.78 0.245785
Target:  5'- --gGAGCgGGAGCCGCgGCGC-CGCg -3'
miRNA:   3'- uuaUUUGgCCUCGGCGgCGCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 54857 0.77 0.263748
Target:  5'- cGUAGGCCGGcgcgGGCCGCCGCaGCgUCGCc -3'
miRNA:   3'- uUAUUUGGCC----UCGGCGGCG-CG-AGCGa -5'
11039 5' -58.1 NC_002794.1 + 124261 0.76 0.324008
Target:  5'- gGGUAGucGCCGGccAGCCGCCGCGC-CGUc -3'
miRNA:   3'- -UUAUU--UGGCC--UCGGCGGCGCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 149669 0.76 0.338719
Target:  5'- --cGAGCgGGGGCgCGUCGCGCUCGaCUg -3'
miRNA:   3'- uuaUUUGgCCUCG-GCGGCGCGAGC-GA- -5'
11039 5' -58.1 NC_002794.1 + 253 0.76 0.338719
Target:  5'- -----cCCGGAcuGCCGCCGCGCgCGCg -3'
miRNA:   3'- uuauuuGGCCU--CGGCGGCGCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 14461 0.75 0.346254
Target:  5'- ---cGACCGugucGAGCggcgCGCCGCGCUCGCUg -3'
miRNA:   3'- uuauUUGGC----CUCG----GCGGCGCGAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 79039 0.75 0.346254
Target:  5'- ----uGCCGGcccGGCCGCuccCGCGCUCGCUc -3'
miRNA:   3'- uuauuUGGCC---UCGGCG---GCGCGAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 6928 0.75 0.377581
Target:  5'- --gAAGCCGcAGCCGCCGCGCg-GCa -3'
miRNA:   3'- uuaUUUGGCcUCGGCGGCGCGagCGa -5'
11039 5' -58.1 NC_002794.1 + 77941 0.74 0.393944
Target:  5'- ----cGCCGGAGgCGCCGCGaUCGCc -3'
miRNA:   3'- uuauuUGGCCUCgGCGGCGCgAGCGa -5'
11039 5' -58.1 NC_002794.1 + 124521 0.74 0.410759
Target:  5'- --gAGACaaGGAGCCGCCGaCGCUgGCg -3'
miRNA:   3'- uuaUUUGg-CCUCGGCGGC-GCGAgCGa -5'
11039 5' -58.1 NC_002794.1 + 55009 0.74 0.428012
Target:  5'- ----cGCCGGGcguccGCCGCCGCGC-CGCc -3'
miRNA:   3'- uuauuUGGCCU-----CGGCGGCGCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 107185 0.73 0.445687
Target:  5'- --gGAGCCGGcGCCGCCGcCGCcggccUCGCc -3'
miRNA:   3'- uuaUUUGGCCuCGGCGGC-GCG-----AGCGa -5'
11039 5' -58.1 NC_002794.1 + 58015 0.73 0.454676
Target:  5'- ----cGCCGGGGCCGCCGCcggcgaacccGC-CGCg -3'
miRNA:   3'- uuauuUGGCCUCGGCGGCG----------CGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 147663 0.73 0.454676
Target:  5'- cGAUuu-CCGGAGCCuGCuCGCGCUCGa- -3'
miRNA:   3'- -UUAuuuGGCCUCGG-CG-GCGCGAGCga -5'
11039 5' -58.1 NC_002794.1 + 68824 0.73 0.454676
Target:  5'- --cAGACgGcGAcGCCGCCgGCGCUCGCg -3'
miRNA:   3'- uuaUUUGgC-CU-CGGCGG-CGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 84068 0.73 0.46285
Target:  5'- ---cAGCCGGAGacgacgaCCGCCGCGC-CGCc -3'
miRNA:   3'- uuauUUGGCCUC-------GGCGGCGCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 13119 0.73 0.463763
Target:  5'- ------gCGGGGUCGCCGCGCggcUCGCUc -3'
miRNA:   3'- uuauuugGCCUCGGCGGCGCG---AGCGA- -5'
11039 5' -58.1 NC_002794.1 + 50659 0.73 0.482214
Target:  5'- --aAAACaUGGcGGCCGCgGCGCUCGCc -3'
miRNA:   3'- uuaUUUG-GCC-UCGGCGgCGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 106258 0.72 0.491572
Target:  5'- --cGAACCGGcgAG-CGCCGCGCgUCGCg -3'
miRNA:   3'- uuaUUUGGCC--UCgGCGGCGCG-AGCGa -5'
11039 5' -58.1 NC_002794.1 + 111614 0.72 0.491572
Target:  5'- --cAGGCCGGcggGGCCGCCGCgGC-CGCc -3'
miRNA:   3'- uuaUUUGGCC---UCGGCGGCG-CGaGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.