miRNA display CGI


Results 21 - 40 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11039 5' -58.1 NC_002794.1 + 149278 0.66 0.852094
Target:  5'- ----cGCCGGcGgCGCgGCGgCUCGCUc -3'
miRNA:   3'- uuauuUGGCCuCgGCGgCGC-GAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 126966 0.66 0.852094
Target:  5'- ---cGACCGcgaGAGCgGCCGCGUguuggUGCUa -3'
miRNA:   3'- uuauUUGGC---CUCGgCGGCGCGa----GCGA- -5'
11039 5' -58.1 NC_002794.1 + 137152 0.66 0.849768
Target:  5'- ---cGGCCGGccgcccucggucccGGCCGCU-CGCUCGCc -3'
miRNA:   3'- uuauUUGGCC--------------UCGGCGGcGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 149856 0.66 0.844273
Target:  5'- --gGGACgaGGAGCgGCCGCccGCUCGg- -3'
miRNA:   3'- uuaUUUGg-CCUCGgCGGCG--CGAGCga -5'
11039 5' -58.1 NC_002794.1 + 12371 0.66 0.844273
Target:  5'- -----cUCGGcgugcucGCCuGCCGCGCUCGCc -3'
miRNA:   3'- uuauuuGGCCu------CGG-CGGCGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 68940 0.66 0.844273
Target:  5'- -----cCCGcGGGCCGCgGCGCcggCGCc -3'
miRNA:   3'- uuauuuGGC-CUCGGCGgCGCGa--GCGa -5'
11039 5' -58.1 NC_002794.1 + 56921 0.66 0.844273
Target:  5'- ----cGCCGG-GCUGCCG-GcCUCGCa -3'
miRNA:   3'- uuauuUGGCCuCGGCGGCgC-GAGCGa -5'
11039 5' -58.1 NC_002794.1 + 98141 0.66 0.84348
Target:  5'- ----cAUCGGAGagauaCCGCCGCcaucgccGCUCGCg -3'
miRNA:   3'- uuauuUGGCCUC-----GGCGGCG-------CGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 14496 0.66 0.836265
Target:  5'- ------gCGGcGGCgGcCCGCGCUCGCg -3'
miRNA:   3'- uuauuugGCC-UCGgC-GGCGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 188340 0.66 0.836265
Target:  5'- ----cGCCGGcggcGCCGUCGCGCcCGUc -3'
miRNA:   3'- uuauuUGGCCu---CGGCGGCGCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 123012 0.66 0.836265
Target:  5'- --cGGGCCGGcuGGCCGUCGUGUUCc-- -3'
miRNA:   3'- uuaUUUGGCC--UCGGCGGCGCGAGcga -5'
11039 5' -58.1 NC_002794.1 + 144884 0.66 0.836265
Target:  5'- --gGGugCGGGGCgagaCGCuCGCGC-CGCUg -3'
miRNA:   3'- uuaUUugGCCUCG----GCG-GCGCGaGCGA- -5'
11039 5' -58.1 NC_002794.1 + 28679 0.66 0.828079
Target:  5'- ----cGCCGGuGGCCGUCGcCGC-CGCc -3'
miRNA:   3'- uuauuUGGCC-UCGGCGGC-GCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 29747 0.66 0.828079
Target:  5'- --cGGACCGGGcGCCGagcCCGCGCcgaGCg -3'
miRNA:   3'- uuaUUUGGCCU-CGGC---GGCGCGag-CGa -5'
11039 5' -58.1 NC_002794.1 + 149394 0.66 0.828079
Target:  5'- ---uGACCGGcaacGUCGCCGCGCgugugUGCc -3'
miRNA:   3'- uuauUUGGCCu---CGGCGGCGCGa----GCGa -5'
11039 5' -58.1 NC_002794.1 + 46187 0.66 0.828079
Target:  5'- --gAGACCccGGCa-CCGCGCUCGCUc -3'
miRNA:   3'- uuaUUUGGccUCGgcGGCGCGAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 99442 0.66 0.825589
Target:  5'- -uUGGACCGGAuCCGCCGCcggggguaucggcgGCUCa-- -3'
miRNA:   3'- uuAUUUGGCCUcGGCGGCG--------------CGAGcga -5'
11039 5' -58.1 NC_002794.1 + 187054 0.67 0.823084
Target:  5'- -----cCCGGAGCCcgcggcccgccagguGCCGCaggcuGCUCGCc -3'
miRNA:   3'- uuauuuGGCCUCGG---------------CGGCG-----CGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 114312 0.67 0.823084
Target:  5'- aGAUccGCCGGAGgcgcuccucguagucCCGCCGCagcgGCUCGUc -3'
miRNA:   3'- -UUAuuUGGCCUC---------------GGCGGCG----CGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 126379 0.67 0.823084
Target:  5'- cGUGGgcGCCGGGGCCugcgcggcggcgugcGCgGCGgUCGCg -3'
miRNA:   3'- uUAUU--UGGCCUCGG---------------CGgCGCgAGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.