miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11039 5' -58.1 NC_002794.1 + 253 0.76 0.338719
Target:  5'- -----cCCGGAcuGCCGCCGCGCgCGCg -3'
miRNA:   3'- uuauuuGGCCU--CGGCGGCGCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 4809 0.69 0.699074
Target:  5'- ------aCGGAGCgCGUCGCGUUCGUc -3'
miRNA:   3'- uuauuugGCCUCG-GCGGCGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 6532 0.66 0.859723
Target:  5'- uGAUGGACCGG-GCCGaCGCGgugUUGCg -3'
miRNA:   3'- -UUAUUUGGCCuCGGCgGCGCg--AGCGa -5'
11039 5' -58.1 NC_002794.1 + 6928 0.75 0.377581
Target:  5'- --gAAGCCGcAGCCGCCGCGCg-GCa -3'
miRNA:   3'- uuaUUUGGCcUCGGCGGCGCGagCGa -5'
11039 5' -58.1 NC_002794.1 + 12371 0.66 0.844273
Target:  5'- -----cUCGGcgugcucGCCuGCCGCGCUCGCc -3'
miRNA:   3'- uuauuuGGCCu------CGG-CGGCGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 12752 0.69 0.689171
Target:  5'- ----uACCaGGAGCUGCCGCuCUUGCc -3'
miRNA:   3'- uuauuUGG-CCUCGGCGGCGcGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 13119 0.73 0.463763
Target:  5'- ------gCGGGGUCGCCGCGCggcUCGCUc -3'
miRNA:   3'- uuauuugGCCUCGGCGGCGCG---AGCGA- -5'
11039 5' -58.1 NC_002794.1 + 14461 0.75 0.346254
Target:  5'- ---cGACCGugucGAGCggcgCGCCGCGCUCGCUg -3'
miRNA:   3'- uuauUUGGC----CUCG----GCGGCGCGAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 14496 0.66 0.836265
Target:  5'- ------gCGGcGGCgGcCCGCGCUCGCg -3'
miRNA:   3'- uuauuugGCC-UCGgC-GGCGCGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 14652 0.67 0.793688
Target:  5'- ----cGCCGGcGCCGCgGCGUcgguccgacUCGCg -3'
miRNA:   3'- uuauuUGGCCuCGGCGgCGCG---------AGCGa -5'
11039 5' -58.1 NC_002794.1 + 15116 0.68 0.732287
Target:  5'- ----cGCCGGAGaccgaCCGCCGUguucuacgugaauucGCUCGCg -3'
miRNA:   3'- uuauuUGGCCUC-----GGCGGCG---------------CGAGCGa -5'
11039 5' -58.1 NC_002794.1 + 19289 0.66 0.859723
Target:  5'- ---uGGCCuGGAGCCucGUCGCG-UCGCUg -3'
miRNA:   3'- uuauUUGG-CCUCGG--CGGCGCgAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 20556 0.7 0.639135
Target:  5'- ---cGACCGGAucCCGCCGuCGCUcCGCa -3'
miRNA:   3'- uuauUUGGCCUc-GGCGGC-GCGA-GCGa -5'
11039 5' -58.1 NC_002794.1 + 22617 0.69 0.718709
Target:  5'- --cGAGCCGaucGGGCCGCUcgagGCGCUCGg- -3'
miRNA:   3'- uuaUUUGGC---CUCGGCGG----CGCGAGCga -5'
11039 5' -58.1 NC_002794.1 + 25538 0.68 0.766392
Target:  5'- cGAUGAGCCGGccagucucAGCCGCCGUucaccuucuccGCUCcGUc -3'
miRNA:   3'- -UUAUUUGGCC--------UCGGCGGCG-----------CGAG-CGa -5'
11039 5' -58.1 NC_002794.1 + 28679 0.66 0.828079
Target:  5'- ----cGCCGGuGGCCGUCGcCGC-CGCc -3'
miRNA:   3'- uuauuUGGCC-UCGGCGGC-GCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 29747 0.66 0.828079
Target:  5'- --cGGACCGGGcGCCGagcCCGCGCcgaGCg -3'
miRNA:   3'- uuaUUUGGCCU-CGGC---GGCGCGag-CGa -5'
11039 5' -58.1 NC_002794.1 + 32605 0.66 0.859723
Target:  5'- --gGGGCCGGGGCCGgggaUCGgGCcCGCc -3'
miRNA:   3'- uuaUUUGGCCUCGGC----GGCgCGaGCGa -5'
11039 5' -58.1 NC_002794.1 + 33666 0.66 0.867154
Target:  5'- cGUGcACUcGcGCuCGCUGCGCUCGCUg -3'
miRNA:   3'- uUAUuUGGcCuCG-GCGGCGCGAGCGA- -5'
11039 5' -58.1 NC_002794.1 + 34841 0.67 0.779273
Target:  5'- ----cGCCGGAGCgggcgucggagcgggCGCCGCGggCGCc -3'
miRNA:   3'- uuauuUGGCCUCG---------------GCGGCGCgaGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.