miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11040 5' -61.2 NC_002794.1 + 24817 0.66 0.77268
Target:  5'- gGCGCGaCCgACGacgGGUCaCGGGgagaCCUCg -3'
miRNA:   3'- aCGCGCcGG-UGCa--UCAG-GCCCa---GGAG- -5'
11040 5' -61.2 NC_002794.1 + 121993 0.66 0.77268
Target:  5'- aGCGCGGCCgggagcuguuccACGUcgucuucuucGGcgCCGGGcgUCUCg -3'
miRNA:   3'- aCGCGCCGG------------UGCA----------UCa-GGCCCa-GGAG- -5'
11040 5' -61.2 NC_002794.1 + 65414 0.66 0.76911
Target:  5'- cGCGCGGagaCGCGccugcccacccUCCGGGuuUCCUCu -3'
miRNA:   3'- aCGCGCCg--GUGCauc--------AGGCCC--AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 41822 0.66 0.75466
Target:  5'- gGCGCccagcaGGCC-CGUGGUC-GGGUCgaUCa -3'
miRNA:   3'- aCGCG------CCGGuGCAUCAGgCCCAGg-AG- -5'
11040 5' -61.2 NC_002794.1 + 54252 0.66 0.75466
Target:  5'- cGCGCGGuCCACGgcGccgcgUCGGG-CCa- -3'
miRNA:   3'- aCGCGCC-GGUGCauCa----GGCCCaGGag -5'
11040 5' -61.2 NC_002794.1 + 108865 0.66 0.7455
Target:  5'- cGCGCGGUCA------CCGGGUCCa- -3'
miRNA:   3'- aCGCGCCGGUgcaucaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 50769 0.66 0.744579
Target:  5'- gGCgGCGGCgACGgcgcGUCuCGGGcggcgccUCCUCg -3'
miRNA:   3'- aCG-CGCCGgUGCau--CAG-GCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 30095 0.66 0.736251
Target:  5'- cGCGCGGCCGguccCGacccaccGcCCGGGUUUUCu -3'
miRNA:   3'- aCGCGCCGGU----GCau-----CaGGCCCAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 107326 0.66 0.736251
Target:  5'- cGCGCGGUU-CGgcuucGGUCCguGGGUCCg- -3'
miRNA:   3'- aCGCGCCGGuGCa----UCAGG--CCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 192152 0.66 0.736251
Target:  5'- gGCGCGGUCGCGgcggAGcCUGcgguaGGUCCg- -3'
miRNA:   3'- aCGCGCCGGUGCa---UCaGGC-----CCAGGag -5'
11040 5' -61.2 NC_002794.1 + 142791 0.66 0.736251
Target:  5'- gGCGCGugcaGCCGCaGUucGG-CCGGGUcggCCUCg -3'
miRNA:   3'- aCGCGC----CGGUG-CA--UCaGGCCCA---GGAG- -5'
11040 5' -61.2 NC_002794.1 + 36731 0.66 0.726919
Target:  5'- cGCGCaGCCcguucACGUAGaacUCCcGGUCCUg -3'
miRNA:   3'- aCGCGcCGG-----UGCAUC---AGGcCCAGGAg -5'
11040 5' -61.2 NC_002794.1 + 194655 0.66 0.717514
Target:  5'- cUGCGuCGGCUGCG----CCGGGUCCc- -3'
miRNA:   3'- -ACGC-GCCGGUGCaucaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 66473 0.66 0.717514
Target:  5'- gGCuccCGGCCACGaUAGcCCGGaUUCUCg -3'
miRNA:   3'- aCGc--GCCGGUGC-AUCaGGCCcAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 119555 0.66 0.717514
Target:  5'- cGC-CGGCCACGU-GUCCcGGagcgCCUUg -3'
miRNA:   3'- aCGcGCCGGUGCAuCAGGcCCa---GGAG- -5'
11040 5' -61.2 NC_002794.1 + 186205 0.66 0.717514
Target:  5'- cGCG-GGCCccagggcagAUGgcGGUCCGGGUCC-Cg -3'
miRNA:   3'- aCGCgCCGG---------UGCa-UCAGGCCCAGGaG- -5'
11040 5' -61.2 NC_002794.1 + 141649 0.67 0.708042
Target:  5'- gGCGUGGCCGCGgccgccggcgGGUCgagcgaagaCGGGUCg-- -3'
miRNA:   3'- aCGCGCCGGUGCa---------UCAG---------GCCCAGgag -5'
11040 5' -61.2 NC_002794.1 + 90979 0.67 0.698513
Target:  5'- gGCGUGGCCuCGUA--CCGGG-CCg- -3'
miRNA:   3'- aCGCGCCGGuGCAUcaGGCCCaGGag -5'
11040 5' -61.2 NC_002794.1 + 15210 0.67 0.698513
Target:  5'- cGCGaUGGCgGCGUcccccGUCCGcgggcugccGGUCCUCu -3'
miRNA:   3'- aCGC-GCCGgUGCAu----CAGGC---------CCAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 149865 0.67 0.688934
Target:  5'- --aGCGGCCGCccgcucggggGGUCUGGGUCaUCg -3'
miRNA:   3'- acgCGCCGGUGca--------UCAGGCCCAGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.