Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11040 | 5' | -61.2 | NC_002794.1 | + | 24817 | 0.66 | 0.77268 |
Target: 5'- gGCGCGaCCgACGacgGGUCaCGGGgagaCCUCg -3' miRNA: 3'- aCGCGCcGG-UGCa--UCAG-GCCCa---GGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 194655 | 0.66 | 0.717514 |
Target: 5'- cUGCGuCGGCUGCG----CCGGGUCCc- -3' miRNA: 3'- -ACGC-GCCGGUGCaucaGGCCCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 66473 | 0.66 | 0.717514 |
Target: 5'- gGCuccCGGCCACGaUAGcCCGGaUUCUCg -3' miRNA: 3'- aCGc--GCCGGUGC-AUCaGGCCcAGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 119555 | 0.66 | 0.717514 |
Target: 5'- cGC-CGGCCACGU-GUCCcGGagcgCCUUg -3' miRNA: 3'- aCGcGCCGGUGCAuCAGGcCCa---GGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 36731 | 0.66 | 0.726919 |
Target: 5'- cGCGCaGCCcguucACGUAGaacUCCcGGUCCUg -3' miRNA: 3'- aCGCGcCGG-----UGCAUC---AGGcCCAGGAg -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 30095 | 0.66 | 0.736251 |
Target: 5'- cGCGCGGCCGguccCGacccaccGcCCGGGUUUUCu -3' miRNA: 3'- aCGCGCCGGU----GCau-----CaGGCCCAGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 186205 | 0.66 | 0.717514 |
Target: 5'- cGCG-GGCCccagggcagAUGgcGGUCCGGGUCC-Cg -3' miRNA: 3'- aCGCgCCGG---------UGCa-UCAGGCCCAGGaG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 107326 | 0.66 | 0.736251 |
Target: 5'- cGCGCGGUU-CGgcuucGGUCCguGGGUCCg- -3' miRNA: 3'- aCGCGCCGGuGCa----UCAGG--CCCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 192152 | 0.66 | 0.736251 |
Target: 5'- gGCGCGGUCGCGgcggAGcCUGcgguaGGUCCg- -3' miRNA: 3'- aCGCGCCGGUGCa---UCaGGC-----CCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 142791 | 0.66 | 0.736251 |
Target: 5'- gGCGCGugcaGCCGCaGUucGG-CCGGGUcggCCUCg -3' miRNA: 3'- aCGCGC----CGGUG-CA--UCaGGCCCA---GGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 121993 | 0.66 | 0.77268 |
Target: 5'- aGCGCGGCCgggagcuguuccACGUcgucuucuucGGcgCCGGGcgUCUCg -3' miRNA: 3'- aCGCGCCGG------------UGCA----------UCa-GGCCCa-GGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 41822 | 0.66 | 0.75466 |
Target: 5'- gGCGCccagcaGGCC-CGUGGUC-GGGUCgaUCa -3' miRNA: 3'- aCGCG------CCGGuGCAUCAGgCCCAGg-AG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 54252 | 0.66 | 0.75466 |
Target: 5'- cGCGCGGuCCACGgcGccgcgUCGGG-CCa- -3' miRNA: 3'- aCGCGCC-GGUGCauCa----GGCCCaGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 65414 | 0.66 | 0.76911 |
Target: 5'- cGCGCGGagaCGCGccugcccacccUCCGGGuuUCCUCu -3' miRNA: 3'- aCGCGCCg--GUGCauc--------AGGCCC--AGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 108865 | 0.66 | 0.7455 |
Target: 5'- cGCGCGGUCA------CCGGGUCCa- -3' miRNA: 3'- aCGCGCCGGUgcaucaGGCCCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 50769 | 0.66 | 0.744579 |
Target: 5'- gGCgGCGGCgACGgcgcGUCuCGGGcggcgccUCCUCg -3' miRNA: 3'- aCG-CGCCGgUGCau--CAG-GCCC-------AGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 90979 | 0.67 | 0.698513 |
Target: 5'- gGCGUGGCCuCGUA--CCGGG-CCg- -3' miRNA: 3'- aCGCGCCGGuGCAUcaGGCCCaGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 149865 | 0.67 | 0.688934 |
Target: 5'- --aGCGGCCGCccgcucggggGGUCUGGGUCaUCg -3' miRNA: 3'- acgCGCCGGUGca--------UCAGGCCCAGgAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 15210 | 0.67 | 0.698513 |
Target: 5'- cGCGaUGGCgGCGUcccccGUCCGcgggcugccGGUCCUCu -3' miRNA: 3'- aCGC-GCCGgUGCAu----CAGGC---------CCAGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 107887 | 0.67 | 0.679311 |
Target: 5'- gGCGCGGCggguGCGgcugCCGGGUCUg- -3' miRNA: 3'- aCGCGCCGg---UGCaucaGGCCCAGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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