miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11040 5' -61.2 NC_002794.1 + 189393 0.77 0.198163
Target:  5'- gUGCuCGGCCACGUAGUCCgccagggccagcGGGUUCUg -3'
miRNA:   3'- -ACGcGCCGGUGCAUCAGG------------CCCAGGAg -5'
11040 5' -61.2 NC_002794.1 + 56907 0.76 0.2228
Target:  5'- cGCGUGGCCACGggcgCCGGGcugccggCCUCg -3'
miRNA:   3'- aCGCGCCGGUGCaucaGGCCCa------GGAG- -5'
11040 5' -61.2 NC_002794.1 + 104486 0.75 0.261616
Target:  5'- cGgGCGGCCACGgcGgCCGGGUCg-- -3'
miRNA:   3'- aCgCGCCGGUGCauCaGGCCCAGgag -5'
11040 5' -61.2 NC_002794.1 + 87047 0.75 0.273675
Target:  5'- gGCGCGGCU-CGgGG-CCGGGUCCUg -3'
miRNA:   3'- aCGCGCCGGuGCaUCaGGCCCAGGAg -5'
11040 5' -61.2 NC_002794.1 + 180733 0.74 0.319381
Target:  5'- cGCGCGGaCgACGccGUCCGGcUCCUCg -3'
miRNA:   3'- aCGCGCC-GgUGCauCAGGCCcAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 191537 0.74 0.32636
Target:  5'- cGCGCcucccGCCGCaGUcgGGUCCGGGUCCa- -3'
miRNA:   3'- aCGCGc----CGGUG-CA--UCAGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 181781 0.71 0.444178
Target:  5'- cGCGCcGCCGCGUcucGUUCGGG-CCUUg -3'
miRNA:   3'- aCGCGcCGGUGCAu--CAGGCCCaGGAG- -5'
11040 5' -61.2 NC_002794.1 + 49019 0.71 0.452853
Target:  5'- cGCgGCGGCCGCGgcgucGUCCGgcgcGGUCgUCa -3'
miRNA:   3'- aCG-CGCCGGUGCau---CAGGC----CCAGgAG- -5'
11040 5' -61.2 NC_002794.1 + 1898 0.71 0.47852
Target:  5'- cGC-CGGCCuuauACGgGGUCCGGGggcguguUCCUCg -3'
miRNA:   3'- aCGcGCCGG----UGCaUCAGGCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 2023 0.71 0.47852
Target:  5'- cGC-CGGCCuuauACGgGGUCCGGGggcguguUCCUCg -3'
miRNA:   3'- aCGcGCCGG----UGCaUCAGGCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 1563 0.71 0.47852
Target:  5'- cGC-CGGCCuuauACGgGGUCCGGGggcguguUCCUCg -3'
miRNA:   3'- aCGcGCCGG----UGCaUCAGGCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 1961 0.71 0.47852
Target:  5'- cGC-CGGCCuuauACGgGGUCCGGGggcguguUCCUCa -3'
miRNA:   3'- aCGcGCCGG----UGCaUCAGGCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 41303 0.71 0.479418
Target:  5'- cGCG-GGCCGCGUGGggucUCCGaGGUCUcCg -3'
miRNA:   3'- aCGCgCCGGUGCAUC----AGGC-CCAGGaG- -5'
11040 5' -61.2 NC_002794.1 + 137341 0.7 0.506723
Target:  5'- cGCGgaCGGCUcgGCGUcGUCgGGGUCUUCu -3'
miRNA:   3'- aCGC--GCCGG--UGCAuCAGgCCCAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 96756 0.7 0.52529
Target:  5'- cGCaaGCGGCCgGCGgucgAGUCgcccgGGGUCCUCc -3'
miRNA:   3'- aCG--CGCCGG-UGCa---UCAGg----CCCAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 68329 0.69 0.544109
Target:  5'- -cCGCGGCCugGUGa-CCGGGUUCa- -3'
miRNA:   3'- acGCGCCGGugCAUcaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 114719 0.69 0.572726
Target:  5'- gGCgGCGGCgGCGgc-UCCGGGUUCgUCg -3'
miRNA:   3'- aCG-CGCCGgUGCaucAGGCCCAGG-AG- -5'
11040 5' -61.2 NC_002794.1 + 115308 0.69 0.589103
Target:  5'- cUGCGcCGccguccgcacggucGCCGCGgcGUCCGGGcCgCUCg -3'
miRNA:   3'- -ACGC-GC--------------CGGUGCauCAGGCCCaG-GAG- -5'
11040 5' -61.2 NC_002794.1 + 22671 0.68 0.599745
Target:  5'- aGCGCGGUCGCuucgcuucCCGGGUCCc- -3'
miRNA:   3'- aCGCGCCGGUGcauca---GGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 77658 0.68 0.601684
Target:  5'- cUGUGCGGCC-CGcgGGUCUgcgGGGUCaUCg -3'
miRNA:   3'- -ACGCGCCGGuGCa-UCAGG---CCCAGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.