miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11040 5' -61.2 NC_002794.1 + 82052 0.67 0.688934
Target:  5'- gGCgGCGGCgGCGUcGUCCucGG-CCUCg -3'
miRNA:   3'- aCG-CGCCGgUGCAuCAGGc-CCaGGAG- -5'
11040 5' -61.2 NC_002794.1 + 120852 0.67 0.679311
Target:  5'- cUGCGCGGCCGuCGUccagcgccucGG-CUGGuGUCCg- -3'
miRNA:   3'- -ACGCGCCGGU-GCA----------UCaGGCC-CAGGag -5'
11040 5' -61.2 NC_002794.1 + 107887 0.67 0.679311
Target:  5'- gGCGCGGCggguGCGgcugCCGGGUCUg- -3'
miRNA:   3'- aCGCGCCGg---UGCaucaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 76548 0.67 0.669654
Target:  5'- cGaCGCGGUCGCGcg--CCGGGUaCUCa -3'
miRNA:   3'- aC-GCGCCGGUGCaucaGGCCCAgGAG- -5'
11040 5' -61.2 NC_002794.1 + 151590 0.67 0.65997
Target:  5'- cGCGCGccgccGCCGCG-GGcCCGcGGuUCCUCg -3'
miRNA:   3'- aCGCGC-----CGGUGCaUCaGGC-CC-AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 113615 0.67 0.659
Target:  5'- cGcCGCGGCCagguucagguugaACGUcucgagcagcGGcCCGGcGUCCUCg -3'
miRNA:   3'- aC-GCGCCGG-------------UGCA----------UCaGGCC-CAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 69798 0.67 0.65609
Target:  5'- aGCGCcGCCGCGUAGcccgccgccgcgaCCGGcGUCCg- -3'
miRNA:   3'- aCGCGcCGGUGCAUCa------------GGCC-CAGGag -5'
11040 5' -61.2 NC_002794.1 + 45001 0.68 0.650265
Target:  5'- cGUGCGGaCCuguugcagacuCGUGG-CCGGGUgCUCc -3'
miRNA:   3'- aCGCGCC-GGu----------GCAUCaGGCCCAgGAG- -5'
11040 5' -61.2 NC_002794.1 + 21880 0.68 0.650265
Target:  5'- gGC-CGGCCGCGggguGUCCGcGG-CCUg -3'
miRNA:   3'- aCGcGCCGGUGCau--CAGGC-CCaGGAg -5'
11040 5' -61.2 NC_002794.1 + 67044 0.68 0.650265
Target:  5'- cGuCGCGGaCC-CGgcGUCCGuGGgcUCCUCg -3'
miRNA:   3'- aC-GCGCC-GGuGCauCAGGC-CC--AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 112754 0.68 0.650265
Target:  5'- -cCGCGGCgGCGgGGUCgGGGUgaggUCUCg -3'
miRNA:   3'- acGCGCCGgUGCaUCAGgCCCA----GGAG- -5'
11040 5' -61.2 NC_002794.1 + 68942 0.68 0.630823
Target:  5'- cGCG-GGCCGCGgcG-CCGGcG-CCUCu -3'
miRNA:   3'- aCGCgCCGGUGCauCaGGCC-CaGGAG- -5'
11040 5' -61.2 NC_002794.1 + 41959 0.68 0.630823
Target:  5'- gUGCGCGGCCugGaAGgUCGGcUCCa- -3'
miRNA:   3'- -ACGCGCCGGugCaUCaGGCCcAGGag -5'
11040 5' -61.2 NC_002794.1 + 185950 0.68 0.627906
Target:  5'- -uCGCGGCCGCGcccGUuucccuguccguucCCGGGUCCg- -3'
miRNA:   3'- acGCGCCGGUGCau-CA--------------GGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 98935 0.68 0.611385
Target:  5'- gGCGCGGCCGgGaAGgggCUGGGg-CUCg -3'
miRNA:   3'- aCGCGCCGGUgCaUCa--GGCCCagGAG- -5'
11040 5' -61.2 NC_002794.1 + 92448 0.68 0.605562
Target:  5'- gUGCGgGGCCGCGcGGacuucaugagcgcgcUCuCGGG-CCUCa -3'
miRNA:   3'- -ACGCgCCGGUGCaUC---------------AG-GCCCaGGAG- -5'
11040 5' -61.2 NC_002794.1 + 49424 0.68 0.601684
Target:  5'- gGCgGCGGCCgucACGgcGUCCGgcgcGGUCgUCg -3'
miRNA:   3'- aCG-CGCCGG---UGCauCAGGC----CCAGgAG- -5'
11040 5' -61.2 NC_002794.1 + 77658 0.68 0.601684
Target:  5'- cUGUGCGGCC-CGcgGGUCUgcgGGGUCaUCg -3'
miRNA:   3'- -ACGCGCCGGuGCa-UCAGG---CCCAGgAG- -5'
11040 5' -61.2 NC_002794.1 + 22671 0.68 0.599745
Target:  5'- aGCGCGGUCGCuucgcuucCCGGGUCCc- -3'
miRNA:   3'- aCGCGCCGGUGcauca---GGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 115308 0.69 0.589103
Target:  5'- cUGCGcCGccguccgcacggucGCCGCGgcGUCCGGGcCgCUCg -3'
miRNA:   3'- -ACGC-GC--------------CGGUGCauCAGGCCCaG-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.