miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11040 5' -61.2 NC_002794.1 + 1563 0.71 0.47852
Target:  5'- cGC-CGGCCuuauACGgGGUCCGGGggcguguUCCUCg -3'
miRNA:   3'- aCGcGCCGG----UGCaUCAGGCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 1898 0.71 0.47852
Target:  5'- cGC-CGGCCuuauACGgGGUCCGGGggcguguUCCUCg -3'
miRNA:   3'- aCGcGCCGG----UGCaUCAGGCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 1961 0.71 0.47852
Target:  5'- cGC-CGGCCuuauACGgGGUCCGGGggcguguUCCUCa -3'
miRNA:   3'- aCGcGCCGG----UGCaUCAGGCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 2023 0.71 0.47852
Target:  5'- cGC-CGGCCuuauACGgGGUCCGGGggcguguUCCUCg -3'
miRNA:   3'- aCGcGCCGG----UGCaUCAGGCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 15210 0.67 0.698513
Target:  5'- cGCGaUGGCgGCGUcccccGUCCGcgggcugccGGUCCUCu -3'
miRNA:   3'- aCGC-GCCGgUGCAu----CAGGC---------CCAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 21880 0.68 0.650265
Target:  5'- gGC-CGGCCGCGggguGUCCGcGG-CCUg -3'
miRNA:   3'- aCGcGCCGGUGCau--CAGGC-CCaGGAg -5'
11040 5' -61.2 NC_002794.1 + 22671 0.68 0.599745
Target:  5'- aGCGCGGUCGCuucgcuucCCGGGUCCc- -3'
miRNA:   3'- aCGCGCCGGUGcauca---GGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 24817 0.66 0.77268
Target:  5'- gGCGCGaCCgACGacgGGUCaCGGGgagaCCUCg -3'
miRNA:   3'- aCGCGCcGG-UGCa--UCAG-GCCCa---GGAG- -5'
11040 5' -61.2 NC_002794.1 + 30095 0.66 0.736251
Target:  5'- cGCGCGGCCGguccCGacccaccGcCCGGGUUUUCu -3'
miRNA:   3'- aCGCGCCGGU----GCau-----CaGGCCCAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 36731 0.66 0.726919
Target:  5'- cGCGCaGCCcguucACGUAGaacUCCcGGUCCUg -3'
miRNA:   3'- aCGCGcCGG-----UGCAUC---AGGcCCAGGAg -5'
11040 5' -61.2 NC_002794.1 + 41303 0.71 0.479418
Target:  5'- cGCG-GGCCGCGUGGggucUCCGaGGUCUcCg -3'
miRNA:   3'- aCGCgCCGGUGCAUC----AGGC-CCAGGaG- -5'
11040 5' -61.2 NC_002794.1 + 41822 0.66 0.75466
Target:  5'- gGCGCccagcaGGCC-CGUGGUC-GGGUCgaUCa -3'
miRNA:   3'- aCGCG------CCGGuGCAUCAGgCCCAGg-AG- -5'
11040 5' -61.2 NC_002794.1 + 41959 0.68 0.630823
Target:  5'- gUGCGCGGCCugGaAGgUCGGcUCCa- -3'
miRNA:   3'- -ACGCGCCGGugCaUCaGGCCcAGGag -5'
11040 5' -61.2 NC_002794.1 + 45001 0.68 0.650265
Target:  5'- cGUGCGGaCCuguugcagacuCGUGG-CCGGGUgCUCc -3'
miRNA:   3'- aCGCGCC-GGu----------GCAUCaGGCCCAgGAG- -5'
11040 5' -61.2 NC_002794.1 + 49019 0.71 0.452853
Target:  5'- cGCgGCGGCCGCGgcgucGUCCGgcgcGGUCgUCa -3'
miRNA:   3'- aCG-CGCCGGUGCau---CAGGC----CCAGgAG- -5'
11040 5' -61.2 NC_002794.1 + 49424 0.68 0.601684
Target:  5'- gGCgGCGGCCgucACGgcGUCCGgcgcGGUCgUCg -3'
miRNA:   3'- aCG-CGCCGG---UGCauCAGGC----CCAGgAG- -5'
11040 5' -61.2 NC_002794.1 + 50769 0.66 0.744579
Target:  5'- gGCgGCGGCgACGgcgcGUCuCGGGcggcgccUCCUCg -3'
miRNA:   3'- aCG-CGCCGgUGCau--CAG-GCCC-------AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 54252 0.66 0.75466
Target:  5'- cGCGCGGuCCACGgcGccgcgUCGGG-CCa- -3'
miRNA:   3'- aCGCGCC-GGUGCauCa----GGCCCaGGag -5'
11040 5' -61.2 NC_002794.1 + 56907 0.76 0.2228
Target:  5'- cGCGUGGCCACGggcgCCGGGcugccggCCUCg -3'
miRNA:   3'- aCGCGCCGGUGCaucaGGCCCa------GGAG- -5'
11040 5' -61.2 NC_002794.1 + 65414 0.66 0.76911
Target:  5'- cGCGCGGagaCGCGccugcccacccUCCGGGuuUCCUCu -3'
miRNA:   3'- aCGCGCCg--GUGCauc--------AGGCCC--AGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.