miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11040 5' -61.2 NC_002794.1 + 66473 0.66 0.717514
Target:  5'- gGCuccCGGCCACGaUAGcCCGGaUUCUCg -3'
miRNA:   3'- aCGc--GCCGGUGC-AUCaGGCCcAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 67044 0.68 0.650265
Target:  5'- cGuCGCGGaCC-CGgcGUCCGuGGgcUCCUCg -3'
miRNA:   3'- aC-GCGCC-GGuGCauCAGGC-CC--AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 68329 0.69 0.544109
Target:  5'- -cCGCGGCCugGUGa-CCGGGUUCa- -3'
miRNA:   3'- acGCGCCGGugCAUcaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 68942 0.68 0.630823
Target:  5'- cGCG-GGCCGCGgcG-CCGGcG-CCUCu -3'
miRNA:   3'- aCGCgCCGGUGCauCaGGCC-CaGGAG- -5'
11040 5' -61.2 NC_002794.1 + 69798 0.67 0.65609
Target:  5'- aGCGCcGCCGCGUAGcccgccgccgcgaCCGGcGUCCg- -3'
miRNA:   3'- aCGCGcCGGUGCAUCa------------GGCC-CAGGag -5'
11040 5' -61.2 NC_002794.1 + 76548 0.67 0.669654
Target:  5'- cGaCGCGGUCGCGcg--CCGGGUaCUCa -3'
miRNA:   3'- aC-GCGCCGGUGCaucaGGCCCAgGAG- -5'
11040 5' -61.2 NC_002794.1 + 77658 0.68 0.601684
Target:  5'- cUGUGCGGCC-CGcgGGUCUgcgGGGUCaUCg -3'
miRNA:   3'- -ACGCGCCGGuGCa-UCAGG---CCCAGgAG- -5'
11040 5' -61.2 NC_002794.1 + 82052 0.67 0.688934
Target:  5'- gGCgGCGGCgGCGUcGUCCucGG-CCUCg -3'
miRNA:   3'- aCG-CGCCGgUGCAuCAGGc-CCaGGAG- -5'
11040 5' -61.2 NC_002794.1 + 87047 0.75 0.273675
Target:  5'- gGCGCGGCU-CGgGG-CCGGGUCCUg -3'
miRNA:   3'- aCGCGCCGGuGCaUCaGGCCCAGGAg -5'
11040 5' -61.2 NC_002794.1 + 90979 0.67 0.698513
Target:  5'- gGCGUGGCCuCGUA--CCGGG-CCg- -3'
miRNA:   3'- aCGCGCCGGuGCAUcaGGCCCaGGag -5'
11040 5' -61.2 NC_002794.1 + 92448 0.68 0.605562
Target:  5'- gUGCGgGGCCGCGcGGacuucaugagcgcgcUCuCGGG-CCUCa -3'
miRNA:   3'- -ACGCgCCGGUGCaUC---------------AG-GCCCaGGAG- -5'
11040 5' -61.2 NC_002794.1 + 96756 0.7 0.52529
Target:  5'- cGCaaGCGGCCgGCGgucgAGUCgcccgGGGUCCUCc -3'
miRNA:   3'- aCG--CGCCGG-UGCa---UCAGg----CCCAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 98935 0.68 0.611385
Target:  5'- gGCGCGGCCGgGaAGgggCUGGGg-CUCg -3'
miRNA:   3'- aCGCGCCGGUgCaUCa--GGCCCagGAG- -5'
11040 5' -61.2 NC_002794.1 + 104486 0.75 0.261616
Target:  5'- cGgGCGGCCACGgcGgCCGGGUCg-- -3'
miRNA:   3'- aCgCGCCGGUGCauCaGGCCCAGgag -5'
11040 5' -61.2 NC_002794.1 + 107326 0.66 0.736251
Target:  5'- cGCGCGGUU-CGgcuucGGUCCguGGGUCCg- -3'
miRNA:   3'- aCGCGCCGGuGCa----UCAGG--CCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 107887 0.67 0.679311
Target:  5'- gGCGCGGCggguGCGgcugCCGGGUCUg- -3'
miRNA:   3'- aCGCGCCGg---UGCaucaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 108865 0.66 0.7455
Target:  5'- cGCGCGGUCA------CCGGGUCCa- -3'
miRNA:   3'- aCGCGCCGGUgcaucaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 112754 0.68 0.650265
Target:  5'- -cCGCGGCgGCGgGGUCgGGGUgaggUCUCg -3'
miRNA:   3'- acGCGCCGgUGCaUCAGgCCCA----GGAG- -5'
11040 5' -61.2 NC_002794.1 + 113615 0.67 0.659
Target:  5'- cGcCGCGGCCagguucagguugaACGUcucgagcagcGGcCCGGcGUCCUCg -3'
miRNA:   3'- aC-GCGCCGG-------------UGCA----------UCaGGCC-CAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 114719 0.69 0.572726
Target:  5'- gGCgGCGGCgGCGgc-UCCGGGUUCgUCg -3'
miRNA:   3'- aCG-CGCCGgUGCaucAGGCCCAGG-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.