Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11040 | 5' | -61.2 | NC_002794.1 | + | 115308 | 0.69 | 0.589103 |
Target: 5'- cUGCGcCGccguccgcacggucGCCGCGgcGUCCGGGcCgCUCg -3' miRNA: 3'- -ACGC-GC--------------CGGUGCauCAGGCCCaG-GAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 119555 | 0.66 | 0.717514 |
Target: 5'- cGC-CGGCCACGU-GUCCcGGagcgCCUUg -3' miRNA: 3'- aCGcGCCGGUGCAuCAGGcCCa---GGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 120852 | 0.67 | 0.679311 |
Target: 5'- cUGCGCGGCCGuCGUccagcgccucGG-CUGGuGUCCg- -3' miRNA: 3'- -ACGCGCCGGU-GCA----------UCaGGCC-CAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 121993 | 0.66 | 0.77268 |
Target: 5'- aGCGCGGCCgggagcuguuccACGUcgucuucuucGGcgCCGGGcgUCUCg -3' miRNA: 3'- aCGCGCCGG------------UGCA----------UCa-GGCCCa-GGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 137341 | 0.7 | 0.506723 |
Target: 5'- cGCGgaCGGCUcgGCGUcGUCgGGGUCUUCu -3' miRNA: 3'- aCGC--GCCGG--UGCAuCAGgCCCAGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 141649 | 0.67 | 0.708042 |
Target: 5'- gGCGUGGCCGCGgccgccggcgGGUCgagcgaagaCGGGUCg-- -3' miRNA: 3'- aCGCGCCGGUGCa---------UCAG---------GCCCAGgag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 142791 | 0.66 | 0.736251 |
Target: 5'- gGCGCGugcaGCCGCaGUucGG-CCGGGUcggCCUCg -3' miRNA: 3'- aCGCGC----CGGUG-CA--UCaGGCCCA---GGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 149865 | 0.67 | 0.688934 |
Target: 5'- --aGCGGCCGCccgcucggggGGUCUGGGUCaUCg -3' miRNA: 3'- acgCGCCGGUGca--------UCAGGCCCAGgAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 151590 | 0.67 | 0.65997 |
Target: 5'- cGCGCGccgccGCCGCG-GGcCCGcGGuUCCUCg -3' miRNA: 3'- aCGCGC-----CGGUGCaUCaGGC-CC-AGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 180733 | 0.74 | 0.319381 |
Target: 5'- cGCGCGGaCgACGccGUCCGGcUCCUCg -3' miRNA: 3'- aCGCGCC-GgUGCauCAGGCCcAGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 181781 | 0.71 | 0.444178 |
Target: 5'- cGCGCcGCCGCGUcucGUUCGGG-CCUUg -3' miRNA: 3'- aCGCGcCGGUGCAu--CAGGCCCaGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 185950 | 0.68 | 0.627906 |
Target: 5'- -uCGCGGCCGCGcccGUuucccuguccguucCCGGGUCCg- -3' miRNA: 3'- acGCGCCGGUGCau-CA--------------GGCCCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 186205 | 0.66 | 0.717514 |
Target: 5'- cGCG-GGCCccagggcagAUGgcGGUCCGGGUCC-Cg -3' miRNA: 3'- aCGCgCCGG---------UGCa-UCAGGCCCAGGaG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 189393 | 0.77 | 0.198163 |
Target: 5'- gUGCuCGGCCACGUAGUCCgccagggccagcGGGUUCUg -3' miRNA: 3'- -ACGcGCCGGUGCAUCAGG------------CCCAGGAg -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 191537 | 0.74 | 0.32636 |
Target: 5'- cGCGCcucccGCCGCaGUcgGGUCCGGGUCCa- -3' miRNA: 3'- aCGCGc----CGGUG-CA--UCAGGCCCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 192152 | 0.66 | 0.736251 |
Target: 5'- gGCGCGGUCGCGgcggAGcCUGcgguaGGUCCg- -3' miRNA: 3'- aCGCGCCGGUGCa---UCaGGC-----CCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 194655 | 0.66 | 0.717514 |
Target: 5'- cUGCGuCGGCUGCG----CCGGGUCCc- -3' miRNA: 3'- -ACGC-GCCGGUGCaucaGGCCCAGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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