miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11040 5' -61.2 NC_002794.1 + 194655 0.66 0.717514
Target:  5'- cUGCGuCGGCUGCG----CCGGGUCCc- -3'
miRNA:   3'- -ACGC-GCCGGUGCaucaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 192152 0.66 0.736251
Target:  5'- gGCGCGGUCGCGgcggAGcCUGcgguaGGUCCg- -3'
miRNA:   3'- aCGCGCCGGUGCa---UCaGGC-----CCAGGag -5'
11040 5' -61.2 NC_002794.1 + 191537 0.74 0.32636
Target:  5'- cGCGCcucccGCCGCaGUcgGGUCCGGGUCCa- -3'
miRNA:   3'- aCGCGc----CGGUG-CA--UCAGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 189393 0.77 0.198163
Target:  5'- gUGCuCGGCCACGUAGUCCgccagggccagcGGGUUCUg -3'
miRNA:   3'- -ACGcGCCGGUGCAUCAGG------------CCCAGGAg -5'
11040 5' -61.2 NC_002794.1 + 186205 0.66 0.717514
Target:  5'- cGCG-GGCCccagggcagAUGgcGGUCCGGGUCC-Cg -3'
miRNA:   3'- aCGCgCCGG---------UGCa-UCAGGCCCAGGaG- -5'
11040 5' -61.2 NC_002794.1 + 185950 0.68 0.627906
Target:  5'- -uCGCGGCCGCGcccGUuucccuguccguucCCGGGUCCg- -3'
miRNA:   3'- acGCGCCGGUGCau-CA--------------GGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 181781 0.71 0.444178
Target:  5'- cGCGCcGCCGCGUcucGUUCGGG-CCUUg -3'
miRNA:   3'- aCGCGcCGGUGCAu--CAGGCCCaGGAG- -5'
11040 5' -61.2 NC_002794.1 + 180733 0.74 0.319381
Target:  5'- cGCGCGGaCgACGccGUCCGGcUCCUCg -3'
miRNA:   3'- aCGCGCC-GgUGCauCAGGCCcAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 151590 0.67 0.65997
Target:  5'- cGCGCGccgccGCCGCG-GGcCCGcGGuUCCUCg -3'
miRNA:   3'- aCGCGC-----CGGUGCaUCaGGC-CC-AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 149865 0.67 0.688934
Target:  5'- --aGCGGCCGCccgcucggggGGUCUGGGUCaUCg -3'
miRNA:   3'- acgCGCCGGUGca--------UCAGGCCCAGgAG- -5'
11040 5' -61.2 NC_002794.1 + 142791 0.66 0.736251
Target:  5'- gGCGCGugcaGCCGCaGUucGG-CCGGGUcggCCUCg -3'
miRNA:   3'- aCGCGC----CGGUG-CA--UCaGGCCCA---GGAG- -5'
11040 5' -61.2 NC_002794.1 + 141649 0.67 0.708042
Target:  5'- gGCGUGGCCGCGgccgccggcgGGUCgagcgaagaCGGGUCg-- -3'
miRNA:   3'- aCGCGCCGGUGCa---------UCAG---------GCCCAGgag -5'
11040 5' -61.2 NC_002794.1 + 137341 0.7 0.506723
Target:  5'- cGCGgaCGGCUcgGCGUcGUCgGGGUCUUCu -3'
miRNA:   3'- aCGC--GCCGG--UGCAuCAGgCCCAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 121993 0.66 0.77268
Target:  5'- aGCGCGGCCgggagcuguuccACGUcgucuucuucGGcgCCGGGcgUCUCg -3'
miRNA:   3'- aCGCGCCGG------------UGCA----------UCa-GGCCCa-GGAG- -5'
11040 5' -61.2 NC_002794.1 + 120852 0.67 0.679311
Target:  5'- cUGCGCGGCCGuCGUccagcgccucGG-CUGGuGUCCg- -3'
miRNA:   3'- -ACGCGCCGGU-GCA----------UCaGGCC-CAGGag -5'
11040 5' -61.2 NC_002794.1 + 119555 0.66 0.717514
Target:  5'- cGC-CGGCCACGU-GUCCcGGagcgCCUUg -3'
miRNA:   3'- aCGcGCCGGUGCAuCAGGcCCa---GGAG- -5'
11040 5' -61.2 NC_002794.1 + 115308 0.69 0.589103
Target:  5'- cUGCGcCGccguccgcacggucGCCGCGgcGUCCGGGcCgCUCg -3'
miRNA:   3'- -ACGC-GC--------------CGGUGCauCAGGCCCaG-GAG- -5'
11040 5' -61.2 NC_002794.1 + 114719 0.69 0.572726
Target:  5'- gGCgGCGGCgGCGgc-UCCGGGUUCgUCg -3'
miRNA:   3'- aCG-CGCCGgUGCaucAGGCCCAGG-AG- -5'
11040 5' -61.2 NC_002794.1 + 113615 0.67 0.659
Target:  5'- cGcCGCGGCCagguucagguugaACGUcucgagcagcGGcCCGGcGUCCUCg -3'
miRNA:   3'- aC-GCGCCGG-------------UGCA----------UCaGGCC-CAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 112754 0.68 0.650265
Target:  5'- -cCGCGGCgGCGgGGUCgGGGUgaggUCUCg -3'
miRNA:   3'- acGCGCCGgUGCaUCAGgCCCA----GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.