Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11040 | 5' | -61.2 | NC_002794.1 | + | 108865 | 0.66 | 0.7455 |
Target: 5'- cGCGCGGUCA------CCGGGUCCa- -3' miRNA: 3'- aCGCGCCGGUgcaucaGGCCCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 107887 | 0.67 | 0.679311 |
Target: 5'- gGCGCGGCggguGCGgcugCCGGGUCUg- -3' miRNA: 3'- aCGCGCCGg---UGCaucaGGCCCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 107326 | 0.66 | 0.736251 |
Target: 5'- cGCGCGGUU-CGgcuucGGUCCguGGGUCCg- -3' miRNA: 3'- aCGCGCCGGuGCa----UCAGG--CCCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 104486 | 0.75 | 0.261616 |
Target: 5'- cGgGCGGCCACGgcGgCCGGGUCg-- -3' miRNA: 3'- aCgCGCCGGUGCauCaGGCCCAGgag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 98935 | 0.68 | 0.611385 |
Target: 5'- gGCGCGGCCGgGaAGgggCUGGGg-CUCg -3' miRNA: 3'- aCGCGCCGGUgCaUCa--GGCCCagGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 96756 | 0.7 | 0.52529 |
Target: 5'- cGCaaGCGGCCgGCGgucgAGUCgcccgGGGUCCUCc -3' miRNA: 3'- aCG--CGCCGG-UGCa---UCAGg----CCCAGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 92448 | 0.68 | 0.605562 |
Target: 5'- gUGCGgGGCCGCGcGGacuucaugagcgcgcUCuCGGG-CCUCa -3' miRNA: 3'- -ACGCgCCGGUGCaUC---------------AG-GCCCaGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 90979 | 0.67 | 0.698513 |
Target: 5'- gGCGUGGCCuCGUA--CCGGG-CCg- -3' miRNA: 3'- aCGCGCCGGuGCAUcaGGCCCaGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 87047 | 0.75 | 0.273675 |
Target: 5'- gGCGCGGCU-CGgGG-CCGGGUCCUg -3' miRNA: 3'- aCGCGCCGGuGCaUCaGGCCCAGGAg -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 82052 | 0.67 | 0.688934 |
Target: 5'- gGCgGCGGCgGCGUcGUCCucGG-CCUCg -3' miRNA: 3'- aCG-CGCCGgUGCAuCAGGc-CCaGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 77658 | 0.68 | 0.601684 |
Target: 5'- cUGUGCGGCC-CGcgGGUCUgcgGGGUCaUCg -3' miRNA: 3'- -ACGCGCCGGuGCa-UCAGG---CCCAGgAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 76548 | 0.67 | 0.669654 |
Target: 5'- cGaCGCGGUCGCGcg--CCGGGUaCUCa -3' miRNA: 3'- aC-GCGCCGGUGCaucaGGCCCAgGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 69798 | 0.67 | 0.65609 |
Target: 5'- aGCGCcGCCGCGUAGcccgccgccgcgaCCGGcGUCCg- -3' miRNA: 3'- aCGCGcCGGUGCAUCa------------GGCC-CAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 68942 | 0.68 | 0.630823 |
Target: 5'- cGCG-GGCCGCGgcG-CCGGcG-CCUCu -3' miRNA: 3'- aCGCgCCGGUGCauCaGGCC-CaGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 68329 | 0.69 | 0.544109 |
Target: 5'- -cCGCGGCCugGUGa-CCGGGUUCa- -3' miRNA: 3'- acGCGCCGGugCAUcaGGCCCAGGag -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 67044 | 0.68 | 0.650265 |
Target: 5'- cGuCGCGGaCC-CGgcGUCCGuGGgcUCCUCg -3' miRNA: 3'- aC-GCGCC-GGuGCauCAGGC-CC--AGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 66473 | 0.66 | 0.717514 |
Target: 5'- gGCuccCGGCCACGaUAGcCCGGaUUCUCg -3' miRNA: 3'- aCGc--GCCGGUGC-AUCaGGCCcAGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 65414 | 0.66 | 0.76911 |
Target: 5'- cGCGCGGagaCGCGccugcccacccUCCGGGuuUCCUCu -3' miRNA: 3'- aCGCGCCg--GUGCauc--------AGGCCC--AGGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 56907 | 0.76 | 0.2228 |
Target: 5'- cGCGUGGCCACGggcgCCGGGcugccggCCUCg -3' miRNA: 3'- aCGCGCCGGUGCaucaGGCCCa------GGAG- -5' |
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11040 | 5' | -61.2 | NC_002794.1 | + | 54252 | 0.66 | 0.75466 |
Target: 5'- cGCGCGGuCCACGgcGccgcgUCGGG-CCa- -3' miRNA: 3'- aCGCGCC-GGUGCauCa----GGCCCaGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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