miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11040 5' -61.2 NC_002794.1 + 41822 0.66 0.75466
Target:  5'- gGCGCccagcaGGCC-CGUGGUC-GGGUCgaUCa -3'
miRNA:   3'- aCGCG------CCGGuGCAUCAGgCCCAGg-AG- -5'
11040 5' -61.2 NC_002794.1 + 121993 0.66 0.77268
Target:  5'- aGCGCGGCCgggagcuguuccACGUcgucuucuucGGcgCCGGGcgUCUCg -3'
miRNA:   3'- aCGCGCCGG------------UGCA----------UCa-GGCCCa-GGAG- -5'
11040 5' -61.2 NC_002794.1 + 119555 0.66 0.717514
Target:  5'- cGC-CGGCCACGU-GUCCcGGagcgCCUUg -3'
miRNA:   3'- aCGcGCCGGUGCAuCAGGcCCa---GGAG- -5'
11040 5' -61.2 NC_002794.1 + 141649 0.67 0.708042
Target:  5'- gGCGUGGCCGCGgccgccggcgGGUCgagcgaagaCGGGUCg-- -3'
miRNA:   3'- aCGCGCCGGUGCa---------UCAG---------GCCCAGgag -5'
11040 5' -61.2 NC_002794.1 + 69798 0.67 0.65609
Target:  5'- aGCGCcGCCGCGUAGcccgccgccgcgaCCGGcGUCCg- -3'
miRNA:   3'- aCGCGcCGGUGCAUCa------------GGCC-CAGGag -5'
11040 5' -61.2 NC_002794.1 + 151590 0.67 0.65997
Target:  5'- cGCGCGccgccGCCGCG-GGcCCGcGGuUCCUCg -3'
miRNA:   3'- aCGCGC-----CGGUGCaUCaGGC-CC-AGGAG- -5'
11040 5' -61.2 NC_002794.1 + 113615 0.67 0.659
Target:  5'- cGcCGCGGCCagguucagguugaACGUcucgagcagcGGcCCGGcGUCCUCg -3'
miRNA:   3'- aC-GCGCCGG-------------UGCA----------UCaGGCC-CAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 76548 0.67 0.669654
Target:  5'- cGaCGCGGUCGCGcg--CCGGGUaCUCa -3'
miRNA:   3'- aC-GCGCCGGUGCaucaGGCCCAgGAG- -5'
11040 5' -61.2 NC_002794.1 + 82052 0.67 0.688934
Target:  5'- gGCgGCGGCgGCGUcGUCCucGG-CCUCg -3'
miRNA:   3'- aCG-CGCCGgUGCAuCAGGc-CCaGGAG- -5'
11040 5' -61.2 NC_002794.1 + 120852 0.67 0.679311
Target:  5'- cUGCGCGGCCGuCGUccagcgccucGG-CUGGuGUCCg- -3'
miRNA:   3'- -ACGCGCCGGU-GCA----------UCaGGCC-CAGGag -5'
11040 5' -61.2 NC_002794.1 + 107887 0.67 0.679311
Target:  5'- gGCGCGGCggguGCGgcugCCGGGUCUg- -3'
miRNA:   3'- aCGCGCCGg---UGCaucaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 15210 0.67 0.698513
Target:  5'- cGCGaUGGCgGCGUcccccGUCCGcgggcugccGGUCCUCu -3'
miRNA:   3'- aCGC-GCCGgUGCAu----CAGGC---------CCAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 149865 0.67 0.688934
Target:  5'- --aGCGGCCGCccgcucggggGGUCUGGGUCaUCg -3'
miRNA:   3'- acgCGCCGGUGca--------UCAGGCCCAGgAG- -5'
11040 5' -61.2 NC_002794.1 + 90979 0.67 0.698513
Target:  5'- gGCGUGGCCuCGUA--CCGGG-CCg- -3'
miRNA:   3'- aCGCGCCGGuGCAUcaGGCCCaGGag -5'
11040 5' -61.2 NC_002794.1 + 194655 0.66 0.717514
Target:  5'- cUGCGuCGGCUGCG----CCGGGUCCc- -3'
miRNA:   3'- -ACGC-GCCGGUGCaucaGGCCCAGGag -5'
11040 5' -61.2 NC_002794.1 + 66473 0.66 0.717514
Target:  5'- gGCuccCGGCCACGaUAGcCCGGaUUCUCg -3'
miRNA:   3'- aCGc--GCCGGUGC-AUCaGGCCcAGGAG- -5'
11040 5' -61.2 NC_002794.1 + 24817 0.66 0.77268
Target:  5'- gGCGCGaCCgACGacgGGUCaCGGGgagaCCUCg -3'
miRNA:   3'- aCGCGCcGG-UGCa--UCAG-GCCCa---GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.