miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 3' -54.9 NC_002794.1 + 69602 0.66 0.974307
Target:  5'- gCGGGAGGCCGccUCCACgACcaaCGCGn -3'
miRNA:   3'- -GCCUUCUGGUcaAGGUGgUGca-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 101621 0.66 0.974307
Target:  5'- gCGGggGugCcGUUUCGuCCGCGagCGUGg -3'
miRNA:   3'- -GCCuuCugGuCAAGGU-GGUGCa-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 119786 0.66 0.97405
Target:  5'- aGGcGGcuCCGG-UCCGCCgacuugaGCGUCGCGu -3'
miRNA:   3'- gCCuUCu-GGUCaAGGUGG-------UGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 44826 0.66 0.973267
Target:  5'- aCGGAGucGCgCAGcuccguuaaagagUCCACCACGUCGuCGa -3'
miRNA:   3'- -GCCUUc-UG-GUCa------------AGGUGGUGCAGC-GC- -5'
11041 3' -54.9 NC_002794.1 + 36432 0.66 0.972736
Target:  5'- gCGGAAGACCAGg--CGCCggagcugcucuuugaACGUCuCGa -3'
miRNA:   3'- -GCCUUCUGGUCaagGUGG---------------UGCAGcGC- -5'
11041 3' -54.9 NC_002794.1 + 187293 0.66 0.971651
Target:  5'- cCGGAcgGGgucACCAucagaUACCACGUCGCGg -3'
miRNA:   3'- -GCCU--UC---UGGUcaag-GUGGUGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 58134 0.66 0.971651
Target:  5'- uGGgcGGCCuGgcCCGCCGCcUCGUGc -3'
miRNA:   3'- gCCuuCUGGuCaaGGUGGUGcAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 38446 0.66 0.968803
Target:  5'- cCGGAcugaGGAgCCGGcgCgGCCGCGgCGCGc -3'
miRNA:   3'- -GCCU----UCU-GGUCaaGgUGGUGCaGCGC- -5'
11041 3' -54.9 NC_002794.1 + 106204 0.66 0.965756
Target:  5'- uGGAAcGCCGuuagUCCACCGuCGcCGCGg -3'
miRNA:   3'- gCCUUcUGGUca--AGGUGGU-GCaGCGC- -5'
11041 3' -54.9 NC_002794.1 + 20551 0.66 0.965756
Target:  5'- aCGGgcGACCGGaucCCGCC--GUCGCu -3'
miRNA:   3'- -GCCuuCUGGUCaa-GGUGGugCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 41868 0.66 0.965756
Target:  5'- cCGGGcaGGGCCGGgcgcugCCacGCCACGUaGCGc -3'
miRNA:   3'- -GCCU--UCUGGUCaa----GG--UGGUGCAgCGC- -5'
11041 3' -54.9 NC_002794.1 + 192633 0.66 0.965756
Target:  5'- uCGGgcGGCCGcuccagccGcgCCGCCGCGcgcUCGCGc -3'
miRNA:   3'- -GCCuuCUGGU--------CaaGGUGGUGC---AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 11535 0.66 0.962507
Target:  5'- gCGGgcGACCgAGgaCCGCggCugGUCGCu -3'
miRNA:   3'- -GCCuuCUGG-UCaaGGUG--GugCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 46869 0.66 0.962507
Target:  5'- cCGuGAccaAGcuGCCGGUccuggCCaACCGCGUCGCGa -3'
miRNA:   3'- -GC-CU---UC--UGGUCAa----GG-UGGUGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 108157 0.66 0.962507
Target:  5'- cCGGGAGcGCCGGcgcgaagaCGCCGCGacgCGCGg -3'
miRNA:   3'- -GCCUUC-UGGUCaag-----GUGGUGCa--GCGC- -5'
11041 3' -54.9 NC_002794.1 + 126595 0.66 0.962507
Target:  5'- gGGAcugagcgccgAGGCCGGcgCCG--ACGUCGCGg -3'
miRNA:   3'- gCCU----------UCUGGUCaaGGUggUGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 50346 0.67 0.959049
Target:  5'- uCGGuc-ACCGGcUCCGCCAUGacCGCGg -3'
miRNA:   3'- -GCCuucUGGUCaAGGUGGUGCa-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 93714 0.67 0.959049
Target:  5'- uGGucGACCugcuGUUgCGCCGC-UCGCGc -3'
miRNA:   3'- gCCuuCUGGu---CAAgGUGGUGcAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 107508 0.67 0.959049
Target:  5'- aCGGggGuGCCGGUcgaCGCCgACGgccggCGCGg -3'
miRNA:   3'- -GCCuuC-UGGUCAag-GUGG-UGCa----GCGC- -5'
11041 3' -54.9 NC_002794.1 + 191368 0.67 0.959049
Target:  5'- gGGAcGGGCCGGacCCuCCGCGccCGCGg -3'
miRNA:   3'- gCCU-UCUGGUCaaGGuGGUGCa-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.