miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 3' -54.9 NC_002794.1 + 67024 0.78 0.419625
Target:  5'- gCGGc-GGCCGGcucCCGCCGCGUCGCGg -3'
miRNA:   3'- -GCCuuCUGGUCaa-GGUGGUGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 156210 0.76 0.557985
Target:  5'- uCGGAGGGCCGGcgacUCCGCCGgcggcuccgcgcuCGUCGUGa -3'
miRNA:   3'- -GCCUUCUGGUCa---AGGUGGU-------------GCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 128469 0.75 0.598627
Target:  5'- aGGAcGACCGGU--CACCGgGUCGCGg -3'
miRNA:   3'- gCCUuCUGGUCAagGUGGUgCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 115501 0.74 0.658676
Target:  5'- aGGuAGACCAGguugaggUCCGCC-UGUCGCa -3'
miRNA:   3'- gCCuUCUGGUCa------AGGUGGuGCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 187434 0.73 0.694456
Target:  5'- uGGAAGGCCAGccgcgccgucugCCGCCgcucgGCGUCGCu -3'
miRNA:   3'- gCCUUCUGGUCaa----------GGUGG-----UGCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 143432 0.73 0.697414
Target:  5'- cCGGAAGGCCAGcaUgacggucacgagcCCGCCGCG-CGCGa -3'
miRNA:   3'- -GCCUUCUGGUCa-A-------------GGUGGUGCaGCGC- -5'
11041 3' -54.9 NC_002794.1 + 83278 0.72 0.774731
Target:  5'- aCGGAcu-CCAGaUCCACCccgaagauccguACGUCGCGa -3'
miRNA:   3'- -GCCUucuGGUCaAGGUGG------------UGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 40954 0.71 0.801578
Target:  5'- -cGAAGACCuGUcCCGCCACGUCcaGCc -3'
miRNA:   3'- gcCUUCUGGuCAaGGUGGUGCAG--CGc -5'
11041 3' -54.9 NC_002794.1 + 115934 0.7 0.851101
Target:  5'- gCGGcGGGCCGGc-CCGCCGCGugUCGCc -3'
miRNA:   3'- -GCCuUCUGGUCaaGGUGGUGC--AGCGc -5'
11041 3' -54.9 NC_002794.1 + 149222 0.7 0.851101
Target:  5'- cCGGAAG-CgAGgcgCCGCCGCcGUCGCc -3'
miRNA:   3'- -GCCUUCuGgUCaa-GGUGGUG-CAGCGc -5'
11041 3' -54.9 NC_002794.1 + 137588 0.7 0.851101
Target:  5'- cCGG-AGugCGGggagCCGCCGCcggcgGUCGCGg -3'
miRNA:   3'- -GCCuUCugGUCaa--GGUGGUG-----CAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 112737 0.7 0.858728
Target:  5'- gCGGAAGGCgCGGUgcUCCGCgGCGgCGgGg -3'
miRNA:   3'- -GCCUUCUG-GUCA--AGGUGgUGCaGCgC- -5'
11041 3' -54.9 NC_002794.1 + 23975 0.7 0.866159
Target:  5'- gCGGcGAGGCCGGcgCCACC--GUCGCu -3'
miRNA:   3'- -GCC-UUCUGGUCaaGGUGGugCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 69630 0.69 0.873389
Target:  5'- aGGAGGACCAGcaUCgGCaagGCGgUCGCGa -3'
miRNA:   3'- gCCUUCUGGUCa-AGgUGg--UGC-AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 151222 0.69 0.873389
Target:  5'- cCGGGucuuGGGCCAGggCUACCGgcucacCGUCGUGc -3'
miRNA:   3'- -GCCU----UCUGGUCaaGGUGGU------GCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 86811 0.69 0.873389
Target:  5'- gGGGAGAuCCAGggCCGCgACcUCGCc -3'
miRNA:   3'- gCCUUCU-GGUCaaGGUGgUGcAGCGc -5'
11041 3' -54.9 NC_002794.1 + 71803 0.69 0.873389
Target:  5'- cCGGcGGGCgCGGcgaggCCGCCuCGUCGCGa -3'
miRNA:   3'- -GCCuUCUG-GUCaa---GGUGGuGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 71853 0.69 0.873389
Target:  5'- aCGGGAccucaccgccGGCCAGacUCCGCUcgACGUCGUGg -3'
miRNA:   3'- -GCCUU----------CUGGUCa-AGGUGG--UGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 124183 0.69 0.880411
Target:  5'- gGGAggGGACUGGUUUCGuCCG-GUCGCGg -3'
miRNA:   3'- gCCU--UCUGGUCAAGGU-GGUgCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 141640 0.69 0.887222
Target:  5'- gGGAAGGCCGGcgUgGCCGCGgcCGCc -3'
miRNA:   3'- gCCUUCUGGUCaaGgUGGUGCa-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.