miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 3' -54.9 NC_002794.1 + 52839 0.67 0.958691
Target:  5'- --aGAGGCCGGUcagcacgUUCGCCACGgcCGCGg -3'
miRNA:   3'- gccUUCUGGUCA-------AGGUGGUGCa-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 152215 0.67 0.955377
Target:  5'- cCGGAGGcguCGGacgUCgcgCGCCACGUCGCGc -3'
miRNA:   3'- -GCCUUCug-GUCa--AG---GUGGUGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 179437 0.67 0.955377
Target:  5'- gCGcGGAGGCguGgaCCACCGCcucgGUCGUGa -3'
miRNA:   3'- -GC-CUUCUGguCaaGGUGGUG----CAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 40826 0.67 0.955377
Target:  5'- uCGGuAGACCGGUgcgCCugC-CGaccUCGCGc -3'
miRNA:   3'- -GCCuUCUGGUCAa--GGugGuGC---AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 98477 0.67 0.951489
Target:  5'- aCGGAagagcaGGGCCAGUUCUguuauucccgACCG-GUCGUGc -3'
miRNA:   3'- -GCCU------UCUGGUCAAGG----------UGGUgCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 118099 0.67 0.951489
Target:  5'- uGGAAcucGGgCAGggCCACgGCGUCgGCGa -3'
miRNA:   3'- gCCUU---CUgGUCaaGGUGgUGCAG-CGC- -5'
11041 3' -54.9 NC_002794.1 + 14645 0.67 0.94738
Target:  5'- aCGGAGacGCCGGcgCCGCgGCGUCGg- -3'
miRNA:   3'- -GCCUUc-UGGUCaaGGUGgUGCAGCgc -5'
11041 3' -54.9 NC_002794.1 + 117370 0.67 0.94738
Target:  5'- gCGGcGGGCCg---CCugCACGgUCGCGg -3'
miRNA:   3'- -GCCuUCUGGucaaGGugGUGC-AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 7565 0.67 0.943048
Target:  5'- gGGAAccCCGGUcacCCACUcgaGCGUCGCGu -3'
miRNA:   3'- gCCUUcuGGUCAa--GGUGG---UGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 128418 0.67 0.943048
Target:  5'- gGGGAGACCGGgaUgACCGgGUgGCc -3'
miRNA:   3'- gCCUUCUGGUCaaGgUGGUgCAgCGc -5'
11041 3' -54.9 NC_002794.1 + 112231 0.67 0.938489
Target:  5'- aGGgcGuCCAGggCCGCCGCGaaCGCc -3'
miRNA:   3'- gCCuuCuGGUCaaGGUGGUGCa-GCGc -5'
11041 3' -54.9 NC_002794.1 + 34101 0.67 0.938489
Target:  5'- uCGGgcGGCCcGgaCCGCgACGUcCGCGa -3'
miRNA:   3'- -GCCuuCUGGuCaaGGUGgUGCA-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 108370 0.67 0.938489
Target:  5'- aGGAGGACCGGgcgCCGgaGCGgggaGCGg -3'
miRNA:   3'- gCCUUCUGGUCaa-GGUggUGCag--CGC- -5'
11041 3' -54.9 NC_002794.1 + 116693 0.68 0.933704
Target:  5'- cCGGGAG-CCGGccUCCagcACCGCGUCGa- -3'
miRNA:   3'- -GCCUUCuGGUCa-AGG---UGGUGCAGCgc -5'
11041 3' -54.9 NC_002794.1 + 46629 0.68 0.928689
Target:  5'- uGGAcgAGAUCAcGUUCCGCC-CGUgcaGCGa -3'
miRNA:   3'- gCCU--UCUGGU-CAAGGUGGuGCAg--CGC- -5'
11041 3' -54.9 NC_002794.1 + 38488 0.68 0.923446
Target:  5'- gCGGAGGaagcgcggcggcGCCGGUcgCCGCCGCcucCGCGa -3'
miRNA:   3'- -GCCUUC------------UGGUCAa-GGUGGUGca-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 140045 0.68 0.923446
Target:  5'- gCGGGAGACacggaaaGGggCuCACCAcauauuCGUCGCGa -3'
miRNA:   3'- -GCCUUCUGg------UCaaG-GUGGU------GCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 6580 0.68 0.917973
Target:  5'- uGGAAGAagUCAccgCCGCCAUGcUCGCGg -3'
miRNA:   3'- gCCUUCU--GGUcaaGGUGGUGC-AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 97449 0.68 0.917973
Target:  5'- aCGGuuaAAGACCAGUaCCAcguguacggauCCACGUgGCu -3'
miRNA:   3'- -GCC---UUCUGGUCAaGGU-----------GGUGCAgCGc -5'
11041 3' -54.9 NC_002794.1 + 103536 0.68 0.917973
Target:  5'- uGGAGGACUGGUUgaugaaggCCACCAUGgCGUc -3'
miRNA:   3'- gCCUUCUGGUCAA--------GGUGGUGCaGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.