miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 3' -54.9 NC_002794.1 + 6580 0.68 0.917973
Target:  5'- uGGAAGAagUCAccgCCGCCAUGcUCGCGg -3'
miRNA:   3'- gCCUUCU--GGUcaaGGUGGUGC-AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 7565 0.67 0.943048
Target:  5'- gGGAAccCCGGUcacCCACUcgaGCGUCGCGu -3'
miRNA:   3'- gCCUUcuGGUCAa--GGUGG---UGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 11535 0.66 0.962507
Target:  5'- gCGGgcGACCgAGgaCCGCggCugGUCGCu -3'
miRNA:   3'- -GCCuuCUGG-UCaaGGUG--GugCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 14645 0.67 0.94738
Target:  5'- aCGGAGacGCCGGcgCCGCgGCGUCGg- -3'
miRNA:   3'- -GCCUUc-UGGUCaaGGUGgUGCAGCgc -5'
11041 3' -54.9 NC_002794.1 + 20551 0.66 0.965756
Target:  5'- aCGGgcGACCGGaucCCGCC--GUCGCu -3'
miRNA:   3'- -GCCuuCUGGUCaa-GGUGGugCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 23975 0.7 0.866159
Target:  5'- gCGGcGAGGCCGGcgCCACC--GUCGCu -3'
miRNA:   3'- -GCC-UUCUGGUCaaGGUGGugCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 34101 0.67 0.938489
Target:  5'- uCGGgcGGCCcGgaCCGCgACGUcCGCGa -3'
miRNA:   3'- -GCCuuCUGGuCaaGGUGgUGCA-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 36432 0.66 0.972736
Target:  5'- gCGGAAGACCAGg--CGCCggagcugcucuuugaACGUCuCGa -3'
miRNA:   3'- -GCCUUCUGGUCaagGUGG---------------UGCAGcGC- -5'
11041 3' -54.9 NC_002794.1 + 38446 0.66 0.968803
Target:  5'- cCGGAcugaGGAgCCGGcgCgGCCGCGgCGCGc -3'
miRNA:   3'- -GCCU----UCU-GGUCaaGgUGGUGCaGCGC- -5'
11041 3' -54.9 NC_002794.1 + 38488 0.68 0.923446
Target:  5'- gCGGAGGaagcgcggcggcGCCGGUcgCCGCCGCcucCGCGa -3'
miRNA:   3'- -GCCUUC------------UGGUCAa-GGUGGUGca-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 40826 0.67 0.955377
Target:  5'- uCGGuAGACCGGUgcgCCugC-CGaccUCGCGc -3'
miRNA:   3'- -GCCuUCUGGUCAa--GGugGuGC---AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 40954 0.71 0.801578
Target:  5'- -cGAAGACCuGUcCCGCCACGUCcaGCc -3'
miRNA:   3'- gcCUUCUGGuCAaGGUGGUGCAG--CGc -5'
11041 3' -54.9 NC_002794.1 + 41868 0.66 0.965756
Target:  5'- cCGGGcaGGGCCGGgcgcugCCacGCCACGUaGCGc -3'
miRNA:   3'- -GCCU--UCUGGUCaa----GG--UGGUGCAgCGC- -5'
11041 3' -54.9 NC_002794.1 + 44826 0.66 0.973267
Target:  5'- aCGGAGucGCgCAGcuccguuaaagagUCCACCACGUCGuCGa -3'
miRNA:   3'- -GCCUUc-UG-GUCa------------AGGUGGUGCAGC-GC- -5'
11041 3' -54.9 NC_002794.1 + 46629 0.68 0.928689
Target:  5'- uGGAcgAGAUCAcGUUCCGCC-CGUgcaGCGa -3'
miRNA:   3'- gCCU--UCUGGU-CAAGGUGGuGCAg--CGC- -5'
11041 3' -54.9 NC_002794.1 + 46869 0.66 0.962507
Target:  5'- cCGuGAccaAGcuGCCGGUccuggCCaACCGCGUCGCGa -3'
miRNA:   3'- -GC-CU---UC--UGGUCAa----GG-UGGUGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 50346 0.67 0.959049
Target:  5'- uCGGuc-ACCGGcUCCGCCAUGacCGCGg -3'
miRNA:   3'- -GCCuucUGGUCaAGGUGGUGCa-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 52839 0.67 0.958691
Target:  5'- --aGAGGCCGGUcagcacgUUCGCCACGgcCGCGg -3'
miRNA:   3'- gccUUCUGGUCA-------AGGUGGUGCa-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 58134 0.66 0.971651
Target:  5'- uGGgcGGCCuGgcCCGCCGCcUCGUGc -3'
miRNA:   3'- gCCuuCUGGuCaaGGUGGUGcAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 67024 0.78 0.419625
Target:  5'- gCGGc-GGCCGGcucCCGCCGCGUCGCGg -3'
miRNA:   3'- -GCCuuCUGGUCaa-GGUGGUGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.