miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 3' -54.9 NC_002794.1 + 192633 0.66 0.965756
Target:  5'- uCGGgcGGCCGcuccagccGcgCCGCCGCGcgcUCGCGc -3'
miRNA:   3'- -GCCuuCUGGU--------CaaGGUGGUGC---AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 191368 0.67 0.959049
Target:  5'- gGGAcGGGCCGGacCCuCCGCGccCGCGg -3'
miRNA:   3'- gCCU-UCUGGUCaaGGuGGUGCa-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 187434 0.73 0.694456
Target:  5'- uGGAAGGCCAGccgcgccgucugCCGCCgcucgGCGUCGCu -3'
miRNA:   3'- gCCUUCUGGUCaa----------GGUGG-----UGCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 187293 0.66 0.971651
Target:  5'- cCGGAcgGGgucACCAucagaUACCACGUCGCGg -3'
miRNA:   3'- -GCCU--UC---UGGUcaag-GUGGUGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 182031 0.69 0.887222
Target:  5'- cCGGGccgccggcgaccAGACCAGgUCCugCGCGUaggGCGc -3'
miRNA:   3'- -GCCU------------UCUGGUCaAGGugGUGCAg--CGC- -5'
11041 3' -54.9 NC_002794.1 + 179437 0.67 0.955377
Target:  5'- gCGcGGAGGCguGgaCCACCGCcucgGUCGUGa -3'
miRNA:   3'- -GC-CUUCUGguCaaGGUGGUG----CAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 178813 0.69 0.893817
Target:  5'- gGGggGACCGGgcacucgggUCUcCCGCGggucUCGCGu -3'
miRNA:   3'- gCCuuCUGGUCa--------AGGuGGUGC----AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 156210 0.76 0.557985
Target:  5'- uCGGAGGGCCGGcgacUCCGCCGgcggcuccgcgcuCGUCGUGa -3'
miRNA:   3'- -GCCUUCUGGUCa---AGGUGGU-------------GCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 154675 0.69 0.906345
Target:  5'- uGGAAGACCGGUUUCGgU-CGUCGa- -3'
miRNA:   3'- gCCUUCUGGUCAAGGUgGuGCAGCgc -5'
11041 3' -54.9 NC_002794.1 + 152215 0.67 0.955377
Target:  5'- cCGGAGGcguCGGacgUCgcgCGCCACGUCGCGc -3'
miRNA:   3'- -GCCUUCug-GUCa--AG---GUGGUGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 151222 0.69 0.873389
Target:  5'- cCGGGucuuGGGCCAGggCUACCGgcucacCGUCGUGc -3'
miRNA:   3'- -GCCU----UCUGGUCaaGGUGGU------GCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 149222 0.7 0.851101
Target:  5'- cCGGAAG-CgAGgcgCCGCCGCcGUCGCc -3'
miRNA:   3'- -GCCUUCuGgUCaa-GGUGGUG-CAGCGc -5'
11041 3' -54.9 NC_002794.1 + 143432 0.73 0.697414
Target:  5'- cCGGAAGGCCAGcaUgacggucacgagcCCGCCGCG-CGCGa -3'
miRNA:   3'- -GCCUUCUGGUCa-A-------------GGUGGUGCaGCGC- -5'
11041 3' -54.9 NC_002794.1 + 141640 0.69 0.887222
Target:  5'- gGGAAGGCCGGcgUgGCCGCGgcCGCc -3'
miRNA:   3'- gCCUUCUGGUCaaGgUGGUGCa-GCGc -5'
11041 3' -54.9 NC_002794.1 + 140045 0.68 0.923446
Target:  5'- gCGGGAGACacggaaaGGggCuCACCAcauauuCGUCGCGa -3'
miRNA:   3'- -GCCUUCUGg------UCaaG-GUGGU------GCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 137588 0.7 0.851101
Target:  5'- cCGG-AGugCGGggagCCGCCGCcggcgGUCGCGg -3'
miRNA:   3'- -GCCuUCugGUCaa--GGUGGUG-----CAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 128469 0.75 0.598627
Target:  5'- aGGAcGACCGGU--CACCGgGUCGCGg -3'
miRNA:   3'- gCCUuCUGGUCAagGUGGUgCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 128418 0.67 0.943048
Target:  5'- gGGGAGACCGGgaUgACCGgGUgGCc -3'
miRNA:   3'- gCCUUCUGGUCaaGgUGGUgCAgCGc -5'
11041 3' -54.9 NC_002794.1 + 126595 0.66 0.962507
Target:  5'- gGGAcugagcgccgAGGCCGGcgCCG--ACGUCGCGg -3'
miRNA:   3'- gCCU----------UCUGGUCaaGGUggUGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 124183 0.69 0.880411
Target:  5'- gGGAggGGACUGGUUUCGuCCG-GUCGCGg -3'
miRNA:   3'- gCCU--UCUGGUCAAGGU-GGUgCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.