miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 3' -54.9 NC_002794.1 + 119786 0.66 0.97405
Target:  5'- aGGcGGcuCCGG-UCCGCCgacuugaGCGUCGCGu -3'
miRNA:   3'- gCCuUCu-GGUCaAGGUGG-------UGCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 118099 0.67 0.951489
Target:  5'- uGGAAcucGGgCAGggCCACgGCGUCgGCGa -3'
miRNA:   3'- gCCUU---CUgGUCaaGGUGgUGCAG-CGC- -5'
11041 3' -54.9 NC_002794.1 + 117370 0.67 0.94738
Target:  5'- gCGGcGGGCCg---CCugCACGgUCGCGg -3'
miRNA:   3'- -GCCuUCUGGucaaGGugGUGC-AGCGC- -5'
11041 3' -54.9 NC_002794.1 + 116693 0.68 0.933704
Target:  5'- cCGGGAG-CCGGccUCCagcACCGCGUCGa- -3'
miRNA:   3'- -GCCUUCuGGUCa-AGG---UGGUGCAGCgc -5'
11041 3' -54.9 NC_002794.1 + 115934 0.7 0.851101
Target:  5'- gCGGcGGGCCGGc-CCGCCGCGugUCGCc -3'
miRNA:   3'- -GCCuUCUGGUCaaGGUGGUGC--AGCGc -5'
11041 3' -54.9 NC_002794.1 + 115501 0.74 0.658676
Target:  5'- aGGuAGACCAGguugaggUCCGCC-UGUCGCa -3'
miRNA:   3'- gCCuUCUGGUCa------AGGUGGuGCAGCGc -5'
11041 3' -54.9 NC_002794.1 + 112737 0.7 0.858728
Target:  5'- gCGGAAGGCgCGGUgcUCCGCgGCGgCGgGg -3'
miRNA:   3'- -GCCUUCUG-GUCA--AGGUGgUGCaGCgC- -5'
11041 3' -54.9 NC_002794.1 + 112231 0.67 0.938489
Target:  5'- aGGgcGuCCAGggCCGCCGCGaaCGCc -3'
miRNA:   3'- gCCuuCuGGUCaaGGUGGUGCa-GCGc -5'
11041 3' -54.9 NC_002794.1 + 108370 0.67 0.938489
Target:  5'- aGGAGGACCGGgcgCCGgaGCGgggaGCGg -3'
miRNA:   3'- gCCUUCUGGUCaa-GGUggUGCag--CGC- -5'
11041 3' -54.9 NC_002794.1 + 108157 0.66 0.962507
Target:  5'- cCGGGAGcGCCGGcgcgaagaCGCCGCGacgCGCGg -3'
miRNA:   3'- -GCCUUC-UGGUCaag-----GUGGUGCa--GCGC- -5'
11041 3' -54.9 NC_002794.1 + 107508 0.67 0.959049
Target:  5'- aCGGggGuGCCGGUcgaCGCCgACGgccggCGCGg -3'
miRNA:   3'- -GCCuuC-UGGUCAag-GUGG-UGCa----GCGC- -5'
11041 3' -54.9 NC_002794.1 + 106204 0.66 0.965756
Target:  5'- uGGAAcGCCGuuagUCCACCGuCGcCGCGg -3'
miRNA:   3'- gCCUUcUGGUca--AGGUGGU-GCaGCGC- -5'
11041 3' -54.9 NC_002794.1 + 103536 0.68 0.917973
Target:  5'- uGGAGGACUGGUUgaugaaggCCACCAUGgCGUc -3'
miRNA:   3'- gCCUUCUGGUCAA--------GGUGGUGCaGCGc -5'
11041 3' -54.9 NC_002794.1 + 101621 0.66 0.974307
Target:  5'- gCGGggGugCcGUUUCGuCCGCGagCGUGg -3'
miRNA:   3'- -GCCuuCugGuCAAGGU-GGUGCa-GCGC- -5'
11041 3' -54.9 NC_002794.1 + 98477 0.67 0.951489
Target:  5'- aCGGAagagcaGGGCCAGUUCUguuauucccgACCG-GUCGUGc -3'
miRNA:   3'- -GCCU------UCUGGUCAAGG----------UGGUgCAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 97449 0.68 0.917973
Target:  5'- aCGGuuaAAGACCAGUaCCAcguguacggauCCACGUgGCu -3'
miRNA:   3'- -GCC---UUCUGGUCAaGGU-----------GGUGCAgCGc -5'
11041 3' -54.9 NC_002794.1 + 93714 0.67 0.959049
Target:  5'- uGGucGACCugcuGUUgCGCCGC-UCGCGc -3'
miRNA:   3'- gCCuuCUGGu---CAAgGUGGUGcAGCGC- -5'
11041 3' -54.9 NC_002794.1 + 87929 0.69 0.891861
Target:  5'- cCGGuAGGACCGGUaugcuaccauacgaUCCGCCGCGauacggguaGCGa -3'
miRNA:   3'- -GCC-UUCUGGUCA--------------AGGUGGUGCag-------CGC- -5'
11041 3' -54.9 NC_002794.1 + 86811 0.69 0.873389
Target:  5'- gGGGAGAuCCAGggCCGCgACcUCGCc -3'
miRNA:   3'- gCCUUCU-GGUCaaGGUGgUGcAGCGc -5'
11041 3' -54.9 NC_002794.1 + 83278 0.72 0.774731
Target:  5'- aCGGAcu-CCAGaUCCACCccgaagauccguACGUCGCGa -3'
miRNA:   3'- -GCCUucuGGUCaAGGUGG------------UGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.