miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 108450 0.66 0.927009
Target:  5'- cUCGCGGcGGCGGCcCGCCGgcaCggGCc -3'
miRNA:   3'- aAGUGCU-UCGCCGuGCGGCa--GaaCGc -5'
11041 5' -56.4 NC_002794.1 + 19534 0.66 0.927009
Target:  5'- -gCGCGgcGCGGCcCGCCGg--UGuCGg -3'
miRNA:   3'- aaGUGCuuCGCCGuGCGGCagaAC-GC- -5'
11041 5' -56.4 NC_002794.1 + 12220 0.66 0.926482
Target:  5'- --gGCGGcgucGGCGGCgccggcgGCGCCGUCc-GCGg -3'
miRNA:   3'- aagUGCU----UCGCCG-------UGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 38677 0.66 0.926482
Target:  5'- -gCGCGAcccGCGGacggggucaccgcCGCGCCGUCgaGCGc -3'
miRNA:   3'- aaGUGCUu--CGCC-------------GUGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 122204 0.66 0.921637
Target:  5'- --gGCGAAGCGGUgccgGCGCCG-CUacgauaaGCGg -3'
miRNA:   3'- aagUGCUUCGCCG----UGCGGCaGAa------CGC- -5'
11041 5' -56.4 NC_002794.1 + 110417 0.66 0.921637
Target:  5'- --gGCGAgagaagccgGGCGGCuguCGUCGUCggugGCGg -3'
miRNA:   3'- aagUGCU---------UCGCCGu--GCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 91054 0.66 0.921637
Target:  5'- --gACGggGC-GCGCGUCGUCaUGUa -3'
miRNA:   3'- aagUGCuuCGcCGUGCGGCAGaACGc -5'
11041 5' -56.4 NC_002794.1 + 82487 0.66 0.921637
Target:  5'- -cCGCGAcGCGGCcCGCCG-CgacGCGc -3'
miRNA:   3'- aaGUGCUuCGCCGuGCGGCaGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 33892 0.66 0.914304
Target:  5'- cUCAUGGAGCGGCACGacaagacgaCCGacgccaagaagucaUCaUGCGc -3'
miRNA:   3'- aAGUGCUUCGCCGUGC---------GGC--------------AGaACGC- -5'
11041 5' -56.4 NC_002794.1 + 100070 0.66 0.910193
Target:  5'- -aCGCuGGAGCuGGCGC-CCGUCUuccacguccgcgUGCGg -3'
miRNA:   3'- aaGUG-CUUCG-CCGUGcGGCAGA------------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 187582 0.66 0.910193
Target:  5'- -cCGuCGgcGCGGC-CGCCGUC--GCGa -3'
miRNA:   3'- aaGU-GCuuCGCCGuGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 54817 0.66 0.910193
Target:  5'- aUCACGAAGCuGUGCGUCauGUUcgGCGg -3'
miRNA:   3'- aAGUGCUUCGcCGUGCGG--CAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 142504 0.66 0.904124
Target:  5'- --aGCGAcguGGCGGaacggaACGUCGUCUUGUc -3'
miRNA:   3'- aagUGCU---UCGCCg-----UGCGGCAGAACGc -5'
11041 5' -56.4 NC_002794.1 + 145584 0.66 0.904124
Target:  5'- --gACGGAGCGGCG-GCCGgCUcccGCGg -3'
miRNA:   3'- aagUGCUUCGCCGUgCGGCaGAa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 92261 0.67 0.897826
Target:  5'- gUCGCu-GGCGGCgGCGCCGg---GCGa -3'
miRNA:   3'- aAGUGcuUCGCCG-UGCGGCagaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 41240 0.67 0.891302
Target:  5'- -cCACGccGCGGC-CGCCGaCgccgGCGg -3'
miRNA:   3'- aaGUGCuuCGCCGuGCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 55293 0.67 0.891302
Target:  5'- --gACGAGGgCGGCgGCGgCGUCgcgGCGg -3'
miRNA:   3'- aagUGCUUC-GCCG-UGCgGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 123008 0.67 0.891302
Target:  5'- cUgACGGGcCGGCugGCCGUCgUGUu -3'
miRNA:   3'- aAgUGCUUcGCCGugCGGCAGaACGc -5'
11041 5' -56.4 NC_002794.1 + 13273 0.67 0.891302
Target:  5'- ---gUGGAGCGGC-CGCUGUUgacgGCGg -3'
miRNA:   3'- aaguGCUUCGCCGuGCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 53893 0.67 0.890638
Target:  5'- gUCGgGAcuccGGCGGCGuccucguCGCCGUCggcgGCGc -3'
miRNA:   3'- aAGUgCU----UCGCCGU-------GCGGCAGaa--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.