Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11041 | 5' | -56.4 | NC_002794.1 | + | 108450 | 0.66 | 0.927009 |
Target: 5'- cUCGCGGcGGCGGCcCGCCGgcaCggGCc -3' miRNA: 3'- aAGUGCU-UCGCCGuGCGGCa--GaaCGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 145584 | 0.66 | 0.904124 |
Target: 5'- --gACGGAGCGGCG-GCCGgCUcccGCGg -3' miRNA: 3'- aagUGCUUCGCCGUgCGGCaGAa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 142504 | 0.66 | 0.904124 |
Target: 5'- --aGCGAcguGGCGGaacggaACGUCGUCUUGUc -3' miRNA: 3'- aagUGCU---UCGCCg-----UGCGGCAGAACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 100070 | 0.66 | 0.910193 |
Target: 5'- -aCGCuGGAGCuGGCGC-CCGUCUuccacguccgcgUGCGg -3' miRNA: 3'- aaGUG-CUUCG-CCGUGcGGCAGA------------ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 187582 | 0.66 | 0.910193 |
Target: 5'- -cCGuCGgcGCGGC-CGCCGUC--GCGa -3' miRNA: 3'- aaGU-GCuuCGCCGuGCGGCAGaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 54817 | 0.66 | 0.910193 |
Target: 5'- aUCACGAAGCuGUGCGUCauGUUcgGCGg -3' miRNA: 3'- aAGUGCUUCGcCGUGCGG--CAGaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 33892 | 0.66 | 0.914304 |
Target: 5'- cUCAUGGAGCGGCACGacaagacgaCCGacgccaagaagucaUCaUGCGc -3' miRNA: 3'- aAGUGCUUCGCCGUGC---------GGC--------------AGaACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 122204 | 0.66 | 0.921637 |
Target: 5'- --gGCGAAGCGGUgccgGCGCCG-CUacgauaaGCGg -3' miRNA: 3'- aagUGCUUCGCCG----UGCGGCaGAa------CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 110417 | 0.66 | 0.921637 |
Target: 5'- --gGCGAgagaagccgGGCGGCuguCGUCGUCggugGCGg -3' miRNA: 3'- aagUGCU---------UCGCCGu--GCGGCAGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 91054 | 0.66 | 0.921637 |
Target: 5'- --gACGggGC-GCGCGUCGUCaUGUa -3' miRNA: 3'- aagUGCuuCGcCGUGCGGCAGaACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 38677 | 0.66 | 0.926482 |
Target: 5'- -gCGCGAcccGCGGacggggucaccgcCGCGCCGUCgaGCGc -3' miRNA: 3'- aaGUGCUu--CGCC-------------GUGCGGCAGaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 82487 | 0.66 | 0.921637 |
Target: 5'- -cCGCGAcGCGGCcCGCCG-CgacGCGc -3' miRNA: 3'- aaGUGCUuCGCCGuGCGGCaGaa-CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 19534 | 0.66 | 0.927009 |
Target: 5'- -gCGCGgcGCGGCcCGCCGg--UGuCGg -3' miRNA: 3'- aaGUGCuuCGCCGuGCGGCagaAC-GC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 12220 | 0.66 | 0.926482 |
Target: 5'- --gGCGGcgucGGCGGCgccggcgGCGCCGUCc-GCGg -3' miRNA: 3'- aagUGCU----UCGCCG-------UGCGGCAGaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 61559 | 0.67 | 0.884556 |
Target: 5'- -cCGCGGcGGCGGC-CGCCGUCg---- -3' miRNA: 3'- aaGUGCU-UCGCCGuGCGGCAGaacgc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 41240 | 0.67 | 0.891302 |
Target: 5'- -cCACGccGCGGC-CGCCGaCgccgGCGg -3' miRNA: 3'- aaGUGCuuCGCCGuGCGGCaGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 55293 | 0.67 | 0.891302 |
Target: 5'- --gACGAGGgCGGCgGCGgCGUCgcgGCGg -3' miRNA: 3'- aagUGCUUC-GCCG-UGCgGCAGaa-CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 123008 | 0.67 | 0.891302 |
Target: 5'- cUgACGGGcCGGCugGCCGUCgUGUu -3' miRNA: 3'- aAgUGCUUcGCCGugCGGCAGaACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 13273 | 0.67 | 0.891302 |
Target: 5'- ---gUGGAGCGGC-CGCUGUUgacgGCGg -3' miRNA: 3'- aaguGCUUCGCCGuGCGGCAGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 115053 | 0.67 | 0.88249 |
Target: 5'- --gGCGGcgGGCGGCAgCGCCGUCcaguccacggccucgGCGg -3' miRNA: 3'- aagUGCU--UCGCCGU-GCGGCAGaa-------------CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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