miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 117359 0.67 0.884556
Target:  5'- aUCucguUGGAGCGGCGgGCCGcCU-GCa -3'
miRNA:   3'- aAGu---GCUUCGCCGUgCGGCaGAaCGc -5'
11041 5' -56.4 NC_002794.1 + 53893 0.67 0.890638
Target:  5'- gUCGgGAcuccGGCGGCGuccucguCGCCGUCggcgGCGc -3'
miRNA:   3'- aAGUgCU----UCGCCGU-------GCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 115053 0.67 0.88249
Target:  5'- --gGCGGcgGGCGGCAgCGCCGUCcaguccacggccucgGCGg -3'
miRNA:   3'- aagUGCU--UCGCCGU-GCGGCAGaa-------------CGC- -5'
11041 5' -56.4 NC_002794.1 + 92261 0.67 0.897826
Target:  5'- gUCGCu-GGCGGCgGCGCCGg---GCGa -3'
miRNA:   3'- aAGUGcuUCGCCG-UGCGGCagaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 13273 0.67 0.891302
Target:  5'- ---gUGGAGCGGC-CGCUGUUgacgGCGg -3'
miRNA:   3'- aaguGCUUCGCCGuGCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 123008 0.67 0.891302
Target:  5'- cUgACGGGcCGGCugGCCGUCgUGUu -3'
miRNA:   3'- aAgUGCUUcGCCGugCGGCAGaACGc -5'
11041 5' -56.4 NC_002794.1 + 55293 0.67 0.891302
Target:  5'- --gACGAGGgCGGCgGCGgCGUCgcgGCGg -3'
miRNA:   3'- aagUGCUUC-GCCG-UGCgGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 41240 0.67 0.891302
Target:  5'- -cCACGccGCGGC-CGCCGaCgccgGCGg -3'
miRNA:   3'- aaGUGCuuCGCCGuGCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 61559 0.67 0.884556
Target:  5'- -cCGCGGcGGCGGC-CGCCGUCg---- -3'
miRNA:   3'- aaGUGCU-UCGCCGuGCGGCAGaacgc -5'
11041 5' -56.4 NC_002794.1 + 36004 0.68 0.831501
Target:  5'- gUCGCGGggcucgGGCGGCGgaaucCGCCGUCcgGCc -3'
miRNA:   3'- aAGUGCU------UCGCCGU-----GCGGCAGaaCGc -5'
11041 5' -56.4 NC_002794.1 + 128535 0.68 0.831501
Target:  5'- cUCugGAcGGUcgGGUGCGCCGUCcUGCu -3'
miRNA:   3'- aAGugCU-UCG--CCGUGCGGCAGaACGc -5'
11041 5' -56.4 NC_002794.1 + 90476 0.68 0.831501
Target:  5'- -gCGCGgcGgGGC-CGCCGUCccGCGc -3'
miRNA:   3'- aaGUGCuuCgCCGuGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 122297 0.68 0.839665
Target:  5'- -gCGCGAggAGUGcccGCugGCCGUCgccgUGCGc -3'
miRNA:   3'- aaGUGCU--UCGC---CGugCGGCAGa---ACGC- -5'
11041 5' -56.4 NC_002794.1 + 183203 0.68 0.839665
Target:  5'- -cCACGccGGCGGCGCGUuCGUCgccaGCGa -3'
miRNA:   3'- aaGUGCu-UCGCCGUGCG-GCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 36953 0.68 0.839665
Target:  5'- gUCGCGcGGCGGCAgGCaGUCgcGCa -3'
miRNA:   3'- aAGUGCuUCGCCGUgCGgCAGaaCGc -5'
11041 5' -56.4 NC_002794.1 + 185177 0.68 0.839665
Target:  5'- -gCGCGgcGCGGUcgGCGCgGUCggcGCGg -3'
miRNA:   3'- aaGUGCuuCGCCG--UGCGgCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 184066 0.68 0.847645
Target:  5'- --gGCGAAGCGGCACGCgcccacgGUgUaGCGg -3'
miRNA:   3'- aagUGCUUCGCCGUGCGg------CAgAaCGC- -5'
11041 5' -56.4 NC_002794.1 + 123789 0.68 0.847645
Target:  5'- -gUugGAGGCGGUgGCGCCGUUcggggGCGc -3'
miRNA:   3'- aaGugCUUCGCCG-UGCGGCAGaa---CGC- -5'
11041 5' -56.4 NC_002794.1 + 123446 0.68 0.853118
Target:  5'- gUCGCcGAGCGGCugGCCGagcacCUguacuacgaggcgcUGCGg -3'
miRNA:   3'- aAGUGcUUCGCCGugCGGCa----GA--------------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 126256 0.68 0.823159
Target:  5'- -gCGCGAggucGGCGGCugGCUGgcggcgcugggCUUGCu -3'
miRNA:   3'- aaGUGCU----UCGCCGugCGGCa----------GAACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.