Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11041 | 5' | -56.4 | NC_002794.1 | + | 123446 | 0.68 | 0.853118 |
Target: 5'- gUCGCcGAGCGGCugGCCGagcacCUguacuacgaggcgcUGCGg -3' miRNA: 3'- aAGUGcUUCGCCGugCGGCa----GA--------------ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 123789 | 0.68 | 0.847645 |
Target: 5'- -gUugGAGGCGGUgGCGCCGUUcggggGCGc -3' miRNA: 3'- aaGugCUUCGCCG-UGCGGCAGaa---CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 184066 | 0.68 | 0.847645 |
Target: 5'- --gGCGAAGCGGCACGCgcccacgGUgUaGCGg -3' miRNA: 3'- aagUGCUUCGCCGUGCGg------CAgAaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 185177 | 0.68 | 0.839665 |
Target: 5'- -gCGCGgcGCGGUcgGCGCgGUCggcGCGg -3' miRNA: 3'- aaGUGCuuCGCCG--UGCGgCAGaa-CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 36953 | 0.68 | 0.839665 |
Target: 5'- gUCGCGcGGCGGCAgGCaGUCgcGCa -3' miRNA: 3'- aAGUGCuUCGCCGUgCGgCAGaaCGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 183203 | 0.68 | 0.839665 |
Target: 5'- -cCACGccGGCGGCGCGUuCGUCgccaGCGa -3' miRNA: 3'- aaGUGCu-UCGCCGUGCG-GCAGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 122297 | 0.68 | 0.839665 |
Target: 5'- -gCGCGAggAGUGcccGCugGCCGUCgccgUGCGc -3' miRNA: 3'- aaGUGCU--UCGC---CGugCGGCAGa---ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 48626 | 0.69 | 0.769823 |
Target: 5'- -aCGCGGAGCGGC-CGUCGgggCccGCGa -3' miRNA: 3'- aaGUGCUUCGCCGuGCGGCa--GaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 131547 | 0.69 | 0.782723 |
Target: 5'- aUCACGGccucgcccguggucgGcGCGGCGC-CCGUCUUGaCGg -3' miRNA: 3'- aAGUGCU---------------U-CGCCGUGcGGCAGAAC-GC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 49417 | 0.69 | 0.779063 |
Target: 5'- -cCGCGGcGGCGGCG-GCCGUCacgGCGu -3' miRNA: 3'- aaGUGCU-UCGCCGUgCGGCAGaa-CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 14454 | 0.69 | 0.769823 |
Target: 5'- -cCGCGGgcgaccgugucgAGCGGCGCGCCGcgCUcGCu -3' miRNA: 3'- aaGUGCU------------UCGCCGUGCGGCa-GAaCGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 37079 | 0.69 | 0.797147 |
Target: 5'- --gGCGAAGCGG-GCGCCGUUgaGCc -3' miRNA: 3'- aagUGCUUCGCCgUGCGGCAGaaCGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 91231 | 0.69 | 0.797147 |
Target: 5'- --gACGgcGCGGCG-GCCGUCgggcUGCGc -3' miRNA: 3'- aagUGCuuCGCCGUgCGGCAGa---ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 61866 | 0.69 | 0.797147 |
Target: 5'- --gACGAcGCcGCGCGCCGUCgucgGCGc -3' miRNA: 3'- aagUGCUuCGcCGUGCGGCAGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 150204 | 0.69 | 0.797147 |
Target: 5'- cUCACGAcgAGCGGCugcUGCCGagCUgcgUGCGa -3' miRNA: 3'- aAGUGCU--UCGCCGu--GCGGCa-GA---ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 148517 | 0.7 | 0.731755 |
Target: 5'- -aCugGAAGCGGCuGCGCCG-CUucccgUGCc -3' miRNA: 3'- aaGugCUUCGCCG-UGCGGCaGA-----ACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 133918 | 0.7 | 0.750994 |
Target: 5'- -cUACGAgacGGCGGcCGCGCCcGUCcagUUGCGg -3' miRNA: 3'- aaGUGCU---UCGCC-GUGCGG-CAG---AACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 146979 | 0.7 | 0.737566 |
Target: 5'- gUCGCGAGGuCGGCGcCGCCGgccgacgucgGCGg -3' miRNA: 3'- aAGUGCUUC-GCCGU-GCGGCagaa------CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 63180 | 0.7 | 0.750994 |
Target: 5'- -cCGCGAAGCGGuCGCGCUccuggGUCUgaccgucgaccUGCGc -3' miRNA: 3'- aaGUGCUUCGCC-GUGCGG-----CAGA-----------ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 145732 | 0.71 | 0.652131 |
Target: 5'- -gCugGAGGCGGCgGCGCCGgcaUCgacgGCGa -3' miRNA: 3'- aaGugCUUCGCCG-UGCGGC---AGaa--CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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