miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 107876 0.75 0.456171
Target:  5'- aUCGCgGAGGCGGCGCGgCGgg-UGCGg -3'
miRNA:   3'- aAGUG-CUUCGCCGUGCgGCagaACGC- -5'
11041 5' -56.4 NC_002794.1 + 95759 0.73 0.541699
Target:  5'- cUCGCGggGCGGCG-GCCG-CgacgGCGg -3'
miRNA:   3'- aAGUGCuuCGCCGUgCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 110270 0.73 0.551565
Target:  5'- gUCGCGAcGGCGGC-CGCCGUCcucggGCc -3'
miRNA:   3'- aAGUGCU-UCGCCGuGCGGCAGaa---CGc -5'
11041 5' -56.4 NC_002794.1 + 101810 0.73 0.551565
Target:  5'- gUUgGCGcAGCGGCGCGCCGUgc-GCGa -3'
miRNA:   3'- -AAgUGCuUCGCCGUGCGGCAgaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 63473 0.73 0.561484
Target:  5'- --gACGAGGCGGCGgcCGCCGUCgacgacgccGCGg -3'
miRNA:   3'- aagUGCUUCGCCGU--GCGGCAGaa-------CGC- -5'
11041 5' -56.4 NC_002794.1 + 62093 0.73 0.57145
Target:  5'- --gGCGAcGCGGCGCGCCGgacggUCUggUGCGu -3'
miRNA:   3'- aagUGCUuCGCCGUGCGGC-----AGA--ACGC- -5'
11041 5' -56.4 NC_002794.1 + 158101 0.72 0.611673
Target:  5'- aUCGUGggGCGGuCGCGCCGUa--GCGg -3'
miRNA:   3'- aAGUGCuuCGCC-GUGCGGCAgaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 37721 0.72 0.621784
Target:  5'- cUCGCGAcccgcgAGCGGCgGCGCCGcCggcgGCGg -3'
miRNA:   3'- aAGUGCU------UCGCCG-UGCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 145261 0.72 0.642021
Target:  5'- aUCGCGAAGCGGUuauUGCCGUg--GCa -3'
miRNA:   3'- aAGUGCUUCGCCGu--GCGGCAgaaCGc -5'
11041 5' -56.4 NC_002794.1 + 145732 0.71 0.652131
Target:  5'- -gCugGAGGCGGCgGCGCCGgcaUCgacgGCGa -3'
miRNA:   3'- aaGugCUUCGCCG-UGCGGC---AGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 119017 0.71 0.652131
Target:  5'- -aCACGAAGCGG-GCGUCGUCgcUGCc -3'
miRNA:   3'- aaGUGCUUCGCCgUGCGGCAGa-ACGc -5'
11041 5' -56.4 NC_002794.1 + 127356 0.71 0.652131
Target:  5'- cUCGCGGcGGCGGCGCGgCCGcUCgugucgGCGg -3'
miRNA:   3'- aAGUGCU-UCGCCGUGC-GGC-AGaa----CGC- -5'
11041 5' -56.4 NC_002794.1 + 46314 0.71 0.662227
Target:  5'- --aGCGcGGCGGCgacgGCGCCGUCgccGCGg -3'
miRNA:   3'- aagUGCuUCGCCG----UGCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 148517 0.7 0.731755
Target:  5'- -aCugGAAGCGGCuGCGCCG-CUucccgUGCc -3'
miRNA:   3'- aaGugCUUCGCCG-UGCGGCaGA-----ACGc -5'
11041 5' -56.4 NC_002794.1 + 146979 0.7 0.737566
Target:  5'- gUCGCGAGGuCGGCGcCGCCGgccgacgucgGCGg -3'
miRNA:   3'- aAGUGCUUC-GCCGU-GCGGCagaa------CGC- -5'
11041 5' -56.4 NC_002794.1 + 133918 0.7 0.750994
Target:  5'- -cUACGAgacGGCGGcCGCGCCcGUCcagUUGCGg -3'
miRNA:   3'- aaGUGCU---UCGCC-GUGCGG-CAG---AACGC- -5'
11041 5' -56.4 NC_002794.1 + 63180 0.7 0.750994
Target:  5'- -cCGCGAAGCGGuCGCGCUccuggGUCUgaccgucgaccUGCGc -3'
miRNA:   3'- aaGUGCUUCGCC-GUGCGG-----CAGA-----------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 48626 0.69 0.769823
Target:  5'- -aCGCGGAGCGGC-CGUCGgggCccGCGa -3'
miRNA:   3'- aaGUGCUUCGCCGuGCGGCa--GaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 14454 0.69 0.769823
Target:  5'- -cCGCGGgcgaccgugucgAGCGGCGCGCCGcgCUcGCu -3'
miRNA:   3'- aaGUGCU------------UCGCCGUGCGGCa-GAaCGc -5'
11041 5' -56.4 NC_002794.1 + 49417 0.69 0.779063
Target:  5'- -cCGCGGcGGCGGCG-GCCGUCacgGCGu -3'
miRNA:   3'- aaGUGCU-UCGCCGUgCGGCAGaa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.