Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11041 | 5' | -56.4 | NC_002794.1 | + | 131547 | 0.69 | 0.782723 |
Target: 5'- aUCACGGccucgcccguggucgGcGCGGCGC-CCGUCUUGaCGg -3' miRNA: 3'- aAGUGCU---------------U-CGCCGUGcGGCAGAAC-GC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 150204 | 0.69 | 0.797147 |
Target: 5'- cUCACGAcgAGCGGCugcUGCCGagCUgcgUGCGa -3' miRNA: 3'- aAGUGCU--UCGCCGu--GCGGCa-GA---ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 37079 | 0.69 | 0.797147 |
Target: 5'- --gGCGAAGCGG-GCGCCGUUgaGCc -3' miRNA: 3'- aagUGCUUCGCCgUGCGGCAGaaCGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 91231 | 0.69 | 0.797147 |
Target: 5'- --gACGgcGCGGCG-GCCGUCgggcUGCGc -3' miRNA: 3'- aagUGCuuCGCCGUgCGGCAGa---ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 61866 | 0.69 | 0.797147 |
Target: 5'- --gACGAcGCcGCGCGCCGUCgucgGCGc -3' miRNA: 3'- aagUGCUuCGcCGUGCGGCAGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 141449 | 0.68 | 0.814648 |
Target: 5'- -gCGCcgGGAGCGGCGCGgCGUCcggacugGCGa -3' miRNA: 3'- aaGUG--CUUCGCCGUGCgGCAGaa-----CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 34064 | 0.68 | 0.818072 |
Target: 5'- -gCACGAcccgccguucccgccGGCGGCcggGCaGCCGUCggGCGg -3' miRNA: 3'- aaGUGCU---------------UCGCCG---UG-CGGCAGaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 116874 | 0.68 | 0.822315 |
Target: 5'- gUCGCGcucgucaGGGgGGCgccgGCGCCGUCUccgGCGg -3' miRNA: 3'- aAGUGC-------UUCgCCG----UGCGGCAGAa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 126256 | 0.68 | 0.823159 |
Target: 5'- -gCGCGAggucGGCGGCugGCUGgcggcgcugggCUUGCu -3' miRNA: 3'- aaGUGCU----UCGCCGugCGGCa----------GAACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 75649 | 0.68 | 0.823159 |
Target: 5'- -aCACG-AGCGGCagcgGCGCCGUCcgccGCu -3' miRNA: 3'- aaGUGCuUCGCCG----UGCGGCAGaa--CGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 143551 | 0.68 | 0.823159 |
Target: 5'- -gCACGAgcacGGUGGCccagccgugcGCGCCGUCcucgGCGg -3' miRNA: 3'- aaGUGCU----UCGCCG----------UGCGGCAGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 21372 | 0.68 | 0.823159 |
Target: 5'- -aCGCGGcGGCGGC-CGCCGUCUc--- -3' miRNA: 3'- aaGUGCU-UCGCCGuGCGGCAGAacgc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 128535 | 0.68 | 0.831501 |
Target: 5'- cUCugGAcGGUcgGGUGCGCCGUCcUGCu -3' miRNA: 3'- aAGugCU-UCG--CCGUGCGGCAGaACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 90476 | 0.68 | 0.831501 |
Target: 5'- -gCGCGgcGgGGC-CGCCGUCccGCGc -3' miRNA: 3'- aaGUGCuuCgCCGuGCGGCAGaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 36004 | 0.68 | 0.831501 |
Target: 5'- gUCGCGGggcucgGGCGGCGgaaucCGCCGUCcgGCc -3' miRNA: 3'- aAGUGCU------UCGCCGU-----GCGGCAGaaCGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 122297 | 0.68 | 0.839665 |
Target: 5'- -gCGCGAggAGUGcccGCugGCCGUCgccgUGCGc -3' miRNA: 3'- aaGUGCU--UCGC---CGugCGGCAGa---ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 36953 | 0.68 | 0.839665 |
Target: 5'- gUCGCGcGGCGGCAgGCaGUCgcGCa -3' miRNA: 3'- aAGUGCuUCGCCGUgCGgCAGaaCGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 185177 | 0.68 | 0.839665 |
Target: 5'- -gCGCGgcGCGGUcgGCGCgGUCggcGCGg -3' miRNA: 3'- aaGUGCuuCGCCG--UGCGgCAGaa-CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 183203 | 0.68 | 0.839665 |
Target: 5'- -cCACGccGGCGGCGCGUuCGUCgccaGCGa -3' miRNA: 3'- aaGUGCu-UCGCCGUGCG-GCAGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 184066 | 0.68 | 0.847645 |
Target: 5'- --gGCGAAGCGGCACGCgcccacgGUgUaGCGg -3' miRNA: 3'- aagUGCUUCGCCGUGCGg------CAgAaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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