miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 61559 0.67 0.884556
Target:  5'- -cCGCGGcGGCGGC-CGCCGUCg---- -3'
miRNA:   3'- aaGUGCU-UCGCCGuGCGGCAGaacgc -5'
11041 5' -56.4 NC_002794.1 + 117359 0.67 0.884556
Target:  5'- aUCucguUGGAGCGGCGgGCCGcCU-GCa -3'
miRNA:   3'- aAGu---GCUUCGCCGUgCGGCaGAaCGc -5'
11041 5' -56.4 NC_002794.1 + 115053 0.67 0.88249
Target:  5'- --gGCGGcgGGCGGCAgCGCCGUCcaguccacggccucgGCGg -3'
miRNA:   3'- aagUGCU--UCGCCGU-GCGGCAGaa-------------CGC- -5'
11041 5' -56.4 NC_002794.1 + 141676 0.67 0.877592
Target:  5'- --aGCGAAGaCGGguCGCCGUac-GCGg -3'
miRNA:   3'- aagUGCUUC-GCCguGCGGCAgaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 144083 0.67 0.877592
Target:  5'- --gACGAGGUGGcCugGCUGUCccgcuugUGCGc -3'
miRNA:   3'- aagUGCUUCGCC-GugCGGCAGa------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 97677 0.67 0.877592
Target:  5'- ---cUGGAGCGGUucgGCGCCGUCaacGCGc -3'
miRNA:   3'- aaguGCUUCGCCG---UGCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 68484 0.67 0.877592
Target:  5'- -gCACgGAGGCGGCcgaGCCGgccgUGCGg -3'
miRNA:   3'- aaGUG-CUUCGCCGug-CGGCaga-ACGC- -5'
11041 5' -56.4 NC_002794.1 + 188786 0.67 0.870413
Target:  5'- --aGCGGuAGCGGCcggccccgccgaGCGCCGUCcagGCGc -3'
miRNA:   3'- aagUGCU-UCGCCG------------UGCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 99920 0.67 0.863025
Target:  5'- aUCACGccguGCGGC--GUgGUCUUGCGg -3'
miRNA:   3'- aAGUGCuu--CGCCGugCGgCAGAACGC- -5'
11041 5' -56.4 NC_002794.1 + 48592 0.68 0.855434
Target:  5'- ----aGGAGCGGCGCGUCGcCgucgGCGu -3'
miRNA:   3'- aagugCUUCGCCGUGCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 123446 0.68 0.853118
Target:  5'- gUCGCcGAGCGGCugGCCGagcacCUguacuacgaggcgcUGCGg -3'
miRNA:   3'- aAGUGcUUCGCCGugCGGCa----GA--------------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 184066 0.68 0.847645
Target:  5'- --gGCGAAGCGGCACGCgcccacgGUgUaGCGg -3'
miRNA:   3'- aagUGCUUCGCCGUGCGg------CAgAaCGC- -5'
11041 5' -56.4 NC_002794.1 + 123789 0.68 0.847645
Target:  5'- -gUugGAGGCGGUgGCGCCGUUcggggGCGc -3'
miRNA:   3'- aaGugCUUCGCCG-UGCGGCAGaa---CGC- -5'
11041 5' -56.4 NC_002794.1 + 185177 0.68 0.839665
Target:  5'- -gCGCGgcGCGGUcgGCGCgGUCggcGCGg -3'
miRNA:   3'- aaGUGCuuCGCCG--UGCGgCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 36953 0.68 0.839665
Target:  5'- gUCGCGcGGCGGCAgGCaGUCgcGCa -3'
miRNA:   3'- aAGUGCuUCGCCGUgCGgCAGaaCGc -5'
11041 5' -56.4 NC_002794.1 + 183203 0.68 0.839665
Target:  5'- -cCACGccGGCGGCGCGUuCGUCgccaGCGa -3'
miRNA:   3'- aaGUGCu-UCGCCGUGCG-GCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 122297 0.68 0.839665
Target:  5'- -gCGCGAggAGUGcccGCugGCCGUCgccgUGCGc -3'
miRNA:   3'- aaGUGCU--UCGC---CGugCGGCAGa---ACGC- -5'
11041 5' -56.4 NC_002794.1 + 90476 0.68 0.831501
Target:  5'- -gCGCGgcGgGGC-CGCCGUCccGCGc -3'
miRNA:   3'- aaGUGCuuCgCCGuGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 128535 0.68 0.831501
Target:  5'- cUCugGAcGGUcgGGUGCGCCGUCcUGCu -3'
miRNA:   3'- aAGugCU-UCG--CCGUGCGGCAGaACGc -5'
11041 5' -56.4 NC_002794.1 + 36004 0.68 0.831501
Target:  5'- gUCGCGGggcucgGGCGGCGgaaucCGCCGUCcgGCc -3'
miRNA:   3'- aAGUGCU------UCGCCGU-----GCGGCAGaaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.