miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 126256 0.68 0.823159
Target:  5'- -gCGCGAggucGGCGGCugGCUGgcggcgcugggCUUGCu -3'
miRNA:   3'- aaGUGCU----UCGCCGugCGGCa----------GAACGc -5'
11041 5' -56.4 NC_002794.1 + 21372 0.68 0.823159
Target:  5'- -aCGCGGcGGCGGC-CGCCGUCUc--- -3'
miRNA:   3'- aaGUGCU-UCGCCGuGCGGCAGAacgc -5'
11041 5' -56.4 NC_002794.1 + 143551 0.68 0.823159
Target:  5'- -gCACGAgcacGGUGGCccagccgugcGCGCCGUCcucgGCGg -3'
miRNA:   3'- aaGUGCU----UCGCCG----------UGCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 75649 0.68 0.823159
Target:  5'- -aCACG-AGCGGCagcgGCGCCGUCcgccGCu -3'
miRNA:   3'- aaGUGCuUCGCCG----UGCGGCAGaa--CGc -5'
11041 5' -56.4 NC_002794.1 + 116874 0.68 0.822315
Target:  5'- gUCGCGcucgucaGGGgGGCgccgGCGCCGUCUccgGCGg -3'
miRNA:   3'- aAGUGC-------UUCgCCG----UGCGGCAGAa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 34064 0.68 0.818072
Target:  5'- -gCACGAcccgccguucccgccGGCGGCcggGCaGCCGUCggGCGg -3'
miRNA:   3'- aaGUGCU---------------UCGCCG---UG-CGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 141449 0.68 0.814648
Target:  5'- -gCGCcgGGAGCGGCGCGgCGUCcggacugGCGa -3'
miRNA:   3'- aaGUG--CUUCGCCGUGCgGCAGaa-----CGC- -5'
11041 5' -56.4 NC_002794.1 + 150204 0.69 0.797147
Target:  5'- cUCACGAcgAGCGGCugcUGCCGagCUgcgUGCGa -3'
miRNA:   3'- aAGUGCU--UCGCCGu--GCGGCa-GA---ACGC- -5'
11041 5' -56.4 NC_002794.1 + 61866 0.69 0.797147
Target:  5'- --gACGAcGCcGCGCGCCGUCgucgGCGc -3'
miRNA:   3'- aagUGCUuCGcCGUGCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 91231 0.69 0.797147
Target:  5'- --gACGgcGCGGCG-GCCGUCgggcUGCGc -3'
miRNA:   3'- aagUGCuuCGCCGUgCGGCAGa---ACGC- -5'
11041 5' -56.4 NC_002794.1 + 37079 0.69 0.797147
Target:  5'- --gGCGAAGCGG-GCGCCGUUgaGCc -3'
miRNA:   3'- aagUGCUUCGCCgUGCGGCAGaaCGc -5'
11041 5' -56.4 NC_002794.1 + 131547 0.69 0.782723
Target:  5'- aUCACGGccucgcccguggucgGcGCGGCGC-CCGUCUUGaCGg -3'
miRNA:   3'- aAGUGCU---------------U-CGCCGUGcGGCAGAAC-GC- -5'
11041 5' -56.4 NC_002794.1 + 49417 0.69 0.779063
Target:  5'- -cCGCGGcGGCGGCG-GCCGUCacgGCGu -3'
miRNA:   3'- aaGUGCU-UCGCCGUgCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 14454 0.69 0.769823
Target:  5'- -cCGCGGgcgaccgugucgAGCGGCGCGCCGcgCUcGCu -3'
miRNA:   3'- aaGUGCU------------UCGCCGUGCGGCa-GAaCGc -5'
11041 5' -56.4 NC_002794.1 + 48626 0.69 0.769823
Target:  5'- -aCGCGGAGCGGC-CGUCGgggCccGCGa -3'
miRNA:   3'- aaGUGCUUCGCCGuGCGGCa--GaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 63180 0.7 0.750994
Target:  5'- -cCGCGAAGCGGuCGCGCUccuggGUCUgaccgucgaccUGCGc -3'
miRNA:   3'- aaGUGCUUCGCC-GUGCGG-----CAGA-----------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 133918 0.7 0.750994
Target:  5'- -cUACGAgacGGCGGcCGCGCCcGUCcagUUGCGg -3'
miRNA:   3'- aaGUGCU---UCGCC-GUGCGG-CAG---AACGC- -5'
11041 5' -56.4 NC_002794.1 + 146979 0.7 0.737566
Target:  5'- gUCGCGAGGuCGGCGcCGCCGgccgacgucgGCGg -3'
miRNA:   3'- aAGUGCUUC-GCCGU-GCGGCagaa------CGC- -5'
11041 5' -56.4 NC_002794.1 + 148517 0.7 0.731755
Target:  5'- -aCugGAAGCGGCuGCGCCG-CUucccgUGCc -3'
miRNA:   3'- aaGugCUUCGCCG-UGCGGCaGA-----ACGc -5'
11041 5' -56.4 NC_002794.1 + 46314 0.71 0.662227
Target:  5'- --aGCGcGGCGGCgacgGCGCCGUCgccGCGg -3'
miRNA:   3'- aagUGCuUCGCCG----UGCGGCAGaa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.