Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11041 | 5' | -56.4 | NC_002794.1 | + | 119017 | 0.71 | 0.652131 |
Target: 5'- -aCACGAAGCGG-GCGUCGUCgcUGCc -3' miRNA: 3'- aaGUGCUUCGCCgUGCGGCAGa-ACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 127356 | 0.71 | 0.652131 |
Target: 5'- cUCGCGGcGGCGGCGCGgCCGcUCgugucgGCGg -3' miRNA: 3'- aAGUGCU-UCGCCGUGC-GGC-AGaa----CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 145732 | 0.71 | 0.652131 |
Target: 5'- -gCugGAGGCGGCgGCGCCGgcaUCgacgGCGa -3' miRNA: 3'- aaGugCUUCGCCG-UGCGGC---AGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 145261 | 0.72 | 0.642021 |
Target: 5'- aUCGCGAAGCGGUuauUGCCGUg--GCa -3' miRNA: 3'- aAGUGCUUCGCCGu--GCGGCAgaaCGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 37721 | 0.72 | 0.621784 |
Target: 5'- cUCGCGAcccgcgAGCGGCgGCGCCGcCggcgGCGg -3' miRNA: 3'- aAGUGCU------UCGCCG-UGCGGCaGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 158101 | 0.72 | 0.611673 |
Target: 5'- aUCGUGggGCGGuCGCGCCGUa--GCGg -3' miRNA: 3'- aAGUGCuuCGCC-GUGCGGCAgaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 62093 | 0.73 | 0.57145 |
Target: 5'- --gGCGAcGCGGCGCGCCGgacggUCUggUGCGu -3' miRNA: 3'- aagUGCUuCGCCGUGCGGC-----AGA--ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 63473 | 0.73 | 0.561484 |
Target: 5'- --gACGAGGCGGCGgcCGCCGUCgacgacgccGCGg -3' miRNA: 3'- aagUGCUUCGCCGU--GCGGCAGaa-------CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 110270 | 0.73 | 0.551565 |
Target: 5'- gUCGCGAcGGCGGC-CGCCGUCcucggGCc -3' miRNA: 3'- aAGUGCU-UCGCCGuGCGGCAGaa---CGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 101810 | 0.73 | 0.551565 |
Target: 5'- gUUgGCGcAGCGGCGCGCCGUgc-GCGa -3' miRNA: 3'- -AAgUGCuUCGCCGUGCGGCAgaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 95759 | 0.73 | 0.541699 |
Target: 5'- cUCGCGggGCGGCG-GCCG-CgacgGCGg -3' miRNA: 3'- aAGUGCuuCGCCGUgCGGCaGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 107876 | 0.75 | 0.456171 |
Target: 5'- aUCGCgGAGGCGGCGCGgCGgg-UGCGg -3' miRNA: 3'- aAGUG-CUUCGCCGUGCgGCagaACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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