miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 12220 0.66 0.926482
Target:  5'- --gGCGGcgucGGCGGCgccggcgGCGCCGUCc-GCGg -3'
miRNA:   3'- aagUGCU----UCGCCG-------UGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 13273 0.67 0.891302
Target:  5'- ---gUGGAGCGGC-CGCUGUUgacgGCGg -3'
miRNA:   3'- aaguGCUUCGCCGuGCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 14454 0.69 0.769823
Target:  5'- -cCGCGGgcgaccgugucgAGCGGCGCGCCGcgCUcGCu -3'
miRNA:   3'- aaGUGCU------------UCGCCGUGCGGCa-GAaCGc -5'
11041 5' -56.4 NC_002794.1 + 19534 0.66 0.927009
Target:  5'- -gCGCGgcGCGGCcCGCCGg--UGuCGg -3'
miRNA:   3'- aaGUGCuuCGCCGuGCGGCagaAC-GC- -5'
11041 5' -56.4 NC_002794.1 + 21372 0.68 0.823159
Target:  5'- -aCGCGGcGGCGGC-CGCCGUCUc--- -3'
miRNA:   3'- aaGUGCU-UCGCCGuGCGGCAGAacgc -5'
11041 5' -56.4 NC_002794.1 + 33892 0.66 0.914304
Target:  5'- cUCAUGGAGCGGCACGacaagacgaCCGacgccaagaagucaUCaUGCGc -3'
miRNA:   3'- aAGUGCUUCGCCGUGC---------GGC--------------AGaACGC- -5'
11041 5' -56.4 NC_002794.1 + 34064 0.68 0.818072
Target:  5'- -gCACGAcccgccguucccgccGGCGGCcggGCaGCCGUCggGCGg -3'
miRNA:   3'- aaGUGCU---------------UCGCCG---UG-CGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 36004 0.68 0.831501
Target:  5'- gUCGCGGggcucgGGCGGCGgaaucCGCCGUCcgGCc -3'
miRNA:   3'- aAGUGCU------UCGCCGU-----GCGGCAGaaCGc -5'
11041 5' -56.4 NC_002794.1 + 36953 0.68 0.839665
Target:  5'- gUCGCGcGGCGGCAgGCaGUCgcGCa -3'
miRNA:   3'- aAGUGCuUCGCCGUgCGgCAGaaCGc -5'
11041 5' -56.4 NC_002794.1 + 37079 0.69 0.797147
Target:  5'- --gGCGAAGCGG-GCGCCGUUgaGCc -3'
miRNA:   3'- aagUGCUUCGCCgUGCGGCAGaaCGc -5'
11041 5' -56.4 NC_002794.1 + 37721 0.72 0.621784
Target:  5'- cUCGCGAcccgcgAGCGGCgGCGCCGcCggcgGCGg -3'
miRNA:   3'- aAGUGCU------UCGCCG-UGCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 38677 0.66 0.926482
Target:  5'- -gCGCGAcccGCGGacggggucaccgcCGCGCCGUCgaGCGc -3'
miRNA:   3'- aaGUGCUu--CGCC-------------GUGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 41240 0.67 0.891302
Target:  5'- -cCACGccGCGGC-CGCCGaCgccgGCGg -3'
miRNA:   3'- aaGUGCuuCGCCGuGCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 46314 0.71 0.662227
Target:  5'- --aGCGcGGCGGCgacgGCGCCGUCgccGCGg -3'
miRNA:   3'- aagUGCuUCGCCG----UGCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 48592 0.68 0.855434
Target:  5'- ----aGGAGCGGCGCGUCGcCgucgGCGu -3'
miRNA:   3'- aagugCUUCGCCGUGCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 48626 0.69 0.769823
Target:  5'- -aCGCGGAGCGGC-CGUCGgggCccGCGa -3'
miRNA:   3'- aaGUGCUUCGCCGuGCGGCa--GaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 49417 0.69 0.779063
Target:  5'- -cCGCGGcGGCGGCG-GCCGUCacgGCGu -3'
miRNA:   3'- aaGUGCU-UCGCCGUgCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 53893 0.67 0.890638
Target:  5'- gUCGgGAcuccGGCGGCGuccucguCGCCGUCggcgGCGc -3'
miRNA:   3'- aAGUgCU----UCGCCGU-------GCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 54817 0.66 0.910193
Target:  5'- aUCACGAAGCuGUGCGUCauGUUcgGCGg -3'
miRNA:   3'- aAGUGCUUCGcCGUGCGG--CAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 55293 0.67 0.891302
Target:  5'- --gACGAGGgCGGCgGCGgCGUCgcgGCGg -3'
miRNA:   3'- aagUGCUUC-GCCG-UGCgGCAGaa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.