miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 61559 0.67 0.884556
Target:  5'- -cCGCGGcGGCGGC-CGCCGUCg---- -3'
miRNA:   3'- aaGUGCU-UCGCCGuGCGGCAGaacgc -5'
11041 5' -56.4 NC_002794.1 + 61866 0.69 0.797147
Target:  5'- --gACGAcGCcGCGCGCCGUCgucgGCGc -3'
miRNA:   3'- aagUGCUuCGcCGUGCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 62093 0.73 0.57145
Target:  5'- --gGCGAcGCGGCGCGCCGgacggUCUggUGCGu -3'
miRNA:   3'- aagUGCUuCGCCGUGCGGC-----AGA--ACGC- -5'
11041 5' -56.4 NC_002794.1 + 63180 0.7 0.750994
Target:  5'- -cCGCGAAGCGGuCGCGCUccuggGUCUgaccgucgaccUGCGc -3'
miRNA:   3'- aaGUGCUUCGCC-GUGCGG-----CAGA-----------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 63473 0.73 0.561484
Target:  5'- --gACGAGGCGGCGgcCGCCGUCgacgacgccGCGg -3'
miRNA:   3'- aagUGCUUCGCCGU--GCGGCAGaa-------CGC- -5'
11041 5' -56.4 NC_002794.1 + 68484 0.67 0.877592
Target:  5'- -gCACgGAGGCGGCcgaGCCGgccgUGCGg -3'
miRNA:   3'- aaGUG-CUUCGCCGug-CGGCaga-ACGC- -5'
11041 5' -56.4 NC_002794.1 + 75649 0.68 0.823159
Target:  5'- -aCACG-AGCGGCagcgGCGCCGUCcgccGCu -3'
miRNA:   3'- aaGUGCuUCGCCG----UGCGGCAGaa--CGc -5'
11041 5' -56.4 NC_002794.1 + 82487 0.66 0.921637
Target:  5'- -cCGCGAcGCGGCcCGCCG-CgacGCGc -3'
miRNA:   3'- aaGUGCUuCGCCGuGCGGCaGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 90476 0.68 0.831501
Target:  5'- -gCGCGgcGgGGC-CGCCGUCccGCGc -3'
miRNA:   3'- aaGUGCuuCgCCGuGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 91054 0.66 0.921637
Target:  5'- --gACGggGC-GCGCGUCGUCaUGUa -3'
miRNA:   3'- aagUGCuuCGcCGUGCGGCAGaACGc -5'
11041 5' -56.4 NC_002794.1 + 91231 0.69 0.797147
Target:  5'- --gACGgcGCGGCG-GCCGUCgggcUGCGc -3'
miRNA:   3'- aagUGCuuCGCCGUgCGGCAGa---ACGC- -5'
11041 5' -56.4 NC_002794.1 + 92261 0.67 0.897826
Target:  5'- gUCGCu-GGCGGCgGCGCCGg---GCGa -3'
miRNA:   3'- aAGUGcuUCGCCG-UGCGGCagaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 95759 0.73 0.541699
Target:  5'- cUCGCGggGCGGCG-GCCG-CgacgGCGg -3'
miRNA:   3'- aAGUGCuuCGCCGUgCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 97677 0.67 0.877592
Target:  5'- ---cUGGAGCGGUucgGCGCCGUCaacGCGc -3'
miRNA:   3'- aaguGCUUCGCCG---UGCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 99920 0.67 0.863025
Target:  5'- aUCACGccguGCGGC--GUgGUCUUGCGg -3'
miRNA:   3'- aAGUGCuu--CGCCGugCGgCAGAACGC- -5'
11041 5' -56.4 NC_002794.1 + 100070 0.66 0.910193
Target:  5'- -aCGCuGGAGCuGGCGC-CCGUCUuccacguccgcgUGCGg -3'
miRNA:   3'- aaGUG-CUUCG-CCGUGcGGCAGA------------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 101810 0.73 0.551565
Target:  5'- gUUgGCGcAGCGGCGCGCCGUgc-GCGa -3'
miRNA:   3'- -AAgUGCuUCGCCGUGCGGCAgaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 107876 0.75 0.456171
Target:  5'- aUCGCgGAGGCGGCGCGgCGgg-UGCGg -3'
miRNA:   3'- aAGUG-CUUCGCCGUGCgGCagaACGC- -5'
11041 5' -56.4 NC_002794.1 + 108450 0.66 0.927009
Target:  5'- cUCGCGGcGGCGGCcCGCCGgcaCggGCc -3'
miRNA:   3'- aAGUGCU-UCGCCGuGCGGCa--GaaCGc -5'
11041 5' -56.4 NC_002794.1 + 110270 0.73 0.551565
Target:  5'- gUCGCGAcGGCGGC-CGCCGUCcucggGCc -3'
miRNA:   3'- aAGUGCU-UCGCCGuGCGGCAGaa---CGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.