Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11041 | 5' | -56.4 | NC_002794.1 | + | 110417 | 0.66 | 0.921637 |
Target: 5'- --gGCGAgagaagccgGGCGGCuguCGUCGUCggugGCGg -3' miRNA: 3'- aagUGCU---------UCGCCGu--GCGGCAGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 115053 | 0.67 | 0.88249 |
Target: 5'- --gGCGGcgGGCGGCAgCGCCGUCcaguccacggccucgGCGg -3' miRNA: 3'- aagUGCU--UCGCCGU-GCGGCAGaa-------------CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 116874 | 0.68 | 0.822315 |
Target: 5'- gUCGCGcucgucaGGGgGGCgccgGCGCCGUCUccgGCGg -3' miRNA: 3'- aAGUGC-------UUCgCCG----UGCGGCAGAa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 117359 | 0.67 | 0.884556 |
Target: 5'- aUCucguUGGAGCGGCGgGCCGcCU-GCa -3' miRNA: 3'- aAGu---GCUUCGCCGUgCGGCaGAaCGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 119017 | 0.71 | 0.652131 |
Target: 5'- -aCACGAAGCGG-GCGUCGUCgcUGCc -3' miRNA: 3'- aaGUGCUUCGCCgUGCGGCAGa-ACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 122204 | 0.66 | 0.921637 |
Target: 5'- --gGCGAAGCGGUgccgGCGCCG-CUacgauaaGCGg -3' miRNA: 3'- aagUGCUUCGCCG----UGCGGCaGAa------CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 122297 | 0.68 | 0.839665 |
Target: 5'- -gCGCGAggAGUGcccGCugGCCGUCgccgUGCGc -3' miRNA: 3'- aaGUGCU--UCGC---CGugCGGCAGa---ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 123008 | 0.67 | 0.891302 |
Target: 5'- cUgACGGGcCGGCugGCCGUCgUGUu -3' miRNA: 3'- aAgUGCUUcGCCGugCGGCAGaACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 123446 | 0.68 | 0.853118 |
Target: 5'- gUCGCcGAGCGGCugGCCGagcacCUguacuacgaggcgcUGCGg -3' miRNA: 3'- aAGUGcUUCGCCGugCGGCa----GA--------------ACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 123789 | 0.68 | 0.847645 |
Target: 5'- -gUugGAGGCGGUgGCGCCGUUcggggGCGc -3' miRNA: 3'- aaGugCUUCGCCG-UGCGGCAGaa---CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 126256 | 0.68 | 0.823159 |
Target: 5'- -gCGCGAggucGGCGGCugGCUGgcggcgcugggCUUGCu -3' miRNA: 3'- aaGUGCU----UCGCCGugCGGCa----------GAACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 127356 | 0.71 | 0.652131 |
Target: 5'- cUCGCGGcGGCGGCGCGgCCGcUCgugucgGCGg -3' miRNA: 3'- aAGUGCU-UCGCCGUGC-GGC-AGaa----CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 128535 | 0.68 | 0.831501 |
Target: 5'- cUCugGAcGGUcgGGUGCGCCGUCcUGCu -3' miRNA: 3'- aAGugCU-UCG--CCGUGCGGCAGaACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 131547 | 0.69 | 0.782723 |
Target: 5'- aUCACGGccucgcccguggucgGcGCGGCGC-CCGUCUUGaCGg -3' miRNA: 3'- aAGUGCU---------------U-CGCCGUGcGGCAGAAC-GC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 133918 | 0.7 | 0.750994 |
Target: 5'- -cUACGAgacGGCGGcCGCGCCcGUCcagUUGCGg -3' miRNA: 3'- aaGUGCU---UCGCC-GUGCGG-CAG---AACGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 141449 | 0.68 | 0.814648 |
Target: 5'- -gCGCcgGGAGCGGCGCGgCGUCcggacugGCGa -3' miRNA: 3'- aaGUG--CUUCGCCGUGCgGCAGaa-----CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 141676 | 0.67 | 0.877592 |
Target: 5'- --aGCGAAGaCGGguCGCCGUac-GCGg -3' miRNA: 3'- aagUGCUUC-GCCguGCGGCAgaaCGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 142504 | 0.66 | 0.904124 |
Target: 5'- --aGCGAcguGGCGGaacggaACGUCGUCUUGUc -3' miRNA: 3'- aagUGCU---UCGCCg-----UGCGGCAGAACGc -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 143551 | 0.68 | 0.823159 |
Target: 5'- -gCACGAgcacGGUGGCccagccgugcGCGCCGUCcucgGCGg -3' miRNA: 3'- aaGUGCU----UCGCCG----------UGCGGCAGaa--CGC- -5' |
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11041 | 5' | -56.4 | NC_002794.1 | + | 144083 | 0.67 | 0.877592 |
Target: 5'- --gACGAGGUGGcCugGCUGUCccgcuugUGCGc -3' miRNA: 3'- aagUGCUUCGCC-GugCGGCAGa------ACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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