miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 188786 0.67 0.870413
Target:  5'- --aGCGGuAGCGGCcggccccgccgaGCGCCGUCcagGCGc -3'
miRNA:   3'- aagUGCU-UCGCCG------------UGCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 187582 0.66 0.910193
Target:  5'- -cCGuCGgcGCGGC-CGCCGUC--GCGa -3'
miRNA:   3'- aaGU-GCuuCGCCGuGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 185177 0.68 0.839665
Target:  5'- -gCGCGgcGCGGUcgGCGCgGUCggcGCGg -3'
miRNA:   3'- aaGUGCuuCGCCG--UGCGgCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 184066 0.68 0.847645
Target:  5'- --gGCGAAGCGGCACGCgcccacgGUgUaGCGg -3'
miRNA:   3'- aagUGCUUCGCCGUGCGg------CAgAaCGC- -5'
11041 5' -56.4 NC_002794.1 + 183203 0.68 0.839665
Target:  5'- -cCACGccGGCGGCGCGUuCGUCgccaGCGa -3'
miRNA:   3'- aaGUGCu-UCGCCGUGCG-GCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 158101 0.72 0.611673
Target:  5'- aUCGUGggGCGGuCGCGCCGUa--GCGg -3'
miRNA:   3'- aAGUGCuuCGCC-GUGCGGCAgaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 150204 0.69 0.797147
Target:  5'- cUCACGAcgAGCGGCugcUGCCGagCUgcgUGCGa -3'
miRNA:   3'- aAGUGCU--UCGCCGu--GCGGCa-GA---ACGC- -5'
11041 5' -56.4 NC_002794.1 + 148517 0.7 0.731755
Target:  5'- -aCugGAAGCGGCuGCGCCG-CUucccgUGCc -3'
miRNA:   3'- aaGugCUUCGCCG-UGCGGCaGA-----ACGc -5'
11041 5' -56.4 NC_002794.1 + 146979 0.7 0.737566
Target:  5'- gUCGCGAGGuCGGCGcCGCCGgccgacgucgGCGg -3'
miRNA:   3'- aAGUGCUUC-GCCGU-GCGGCagaa------CGC- -5'
11041 5' -56.4 NC_002794.1 + 145732 0.71 0.652131
Target:  5'- -gCugGAGGCGGCgGCGCCGgcaUCgacgGCGa -3'
miRNA:   3'- aaGugCUUCGCCG-UGCGGC---AGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 145584 0.66 0.904124
Target:  5'- --gACGGAGCGGCG-GCCGgCUcccGCGg -3'
miRNA:   3'- aagUGCUUCGCCGUgCGGCaGAa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 145261 0.72 0.642021
Target:  5'- aUCGCGAAGCGGUuauUGCCGUg--GCa -3'
miRNA:   3'- aAGUGCUUCGCCGu--GCGGCAgaaCGc -5'
11041 5' -56.4 NC_002794.1 + 144083 0.67 0.877592
Target:  5'- --gACGAGGUGGcCugGCUGUCccgcuugUGCGc -3'
miRNA:   3'- aagUGCUUCGCC-GugCGGCAGa------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 143551 0.68 0.823159
Target:  5'- -gCACGAgcacGGUGGCccagccgugcGCGCCGUCcucgGCGg -3'
miRNA:   3'- aaGUGCU----UCGCCG----------UGCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 142504 0.66 0.904124
Target:  5'- --aGCGAcguGGCGGaacggaACGUCGUCUUGUc -3'
miRNA:   3'- aagUGCU---UCGCCg-----UGCGGCAGAACGc -5'
11041 5' -56.4 NC_002794.1 + 141676 0.67 0.877592
Target:  5'- --aGCGAAGaCGGguCGCCGUac-GCGg -3'
miRNA:   3'- aagUGCUUC-GCCguGCGGCAgaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 141449 0.68 0.814648
Target:  5'- -gCGCcgGGAGCGGCGCGgCGUCcggacugGCGa -3'
miRNA:   3'- aaGUG--CUUCGCCGUGCgGCAGaa-----CGC- -5'
11041 5' -56.4 NC_002794.1 + 133918 0.7 0.750994
Target:  5'- -cUACGAgacGGCGGcCGCGCCcGUCcagUUGCGg -3'
miRNA:   3'- aaGUGCU---UCGCC-GUGCGG-CAG---AACGC- -5'
11041 5' -56.4 NC_002794.1 + 131547 0.69 0.782723
Target:  5'- aUCACGGccucgcccguggucgGcGCGGCGC-CCGUCUUGaCGg -3'
miRNA:   3'- aAGUGCU---------------U-CGCCGUGcGGCAGAAC-GC- -5'
11041 5' -56.4 NC_002794.1 + 128535 0.68 0.831501
Target:  5'- cUCugGAcGGUcgGGUGCGCCGUCcUGCu -3'
miRNA:   3'- aAGugCU-UCG--CCGUGCGGCAGaACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.