miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 127356 0.71 0.652131
Target:  5'- cUCGCGGcGGCGGCGCGgCCGcUCgugucgGCGg -3'
miRNA:   3'- aAGUGCU-UCGCCGUGC-GGC-AGaa----CGC- -5'
11041 5' -56.4 NC_002794.1 + 126256 0.68 0.823159
Target:  5'- -gCGCGAggucGGCGGCugGCUGgcggcgcugggCUUGCu -3'
miRNA:   3'- aaGUGCU----UCGCCGugCGGCa----------GAACGc -5'
11041 5' -56.4 NC_002794.1 + 123789 0.68 0.847645
Target:  5'- -gUugGAGGCGGUgGCGCCGUUcggggGCGc -3'
miRNA:   3'- aaGugCUUCGCCG-UGCGGCAGaa---CGC- -5'
11041 5' -56.4 NC_002794.1 + 123446 0.68 0.853118
Target:  5'- gUCGCcGAGCGGCugGCCGagcacCUguacuacgaggcgcUGCGg -3'
miRNA:   3'- aAGUGcUUCGCCGugCGGCa----GA--------------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 123008 0.67 0.891302
Target:  5'- cUgACGGGcCGGCugGCCGUCgUGUu -3'
miRNA:   3'- aAgUGCUUcGCCGugCGGCAGaACGc -5'
11041 5' -56.4 NC_002794.1 + 122297 0.68 0.839665
Target:  5'- -gCGCGAggAGUGcccGCugGCCGUCgccgUGCGc -3'
miRNA:   3'- aaGUGCU--UCGC---CGugCGGCAGa---ACGC- -5'
11041 5' -56.4 NC_002794.1 + 122204 0.66 0.921637
Target:  5'- --gGCGAAGCGGUgccgGCGCCG-CUacgauaaGCGg -3'
miRNA:   3'- aagUGCUUCGCCG----UGCGGCaGAa------CGC- -5'
11041 5' -56.4 NC_002794.1 + 119017 0.71 0.652131
Target:  5'- -aCACGAAGCGG-GCGUCGUCgcUGCc -3'
miRNA:   3'- aaGUGCUUCGCCgUGCGGCAGa-ACGc -5'
11041 5' -56.4 NC_002794.1 + 117359 0.67 0.884556
Target:  5'- aUCucguUGGAGCGGCGgGCCGcCU-GCa -3'
miRNA:   3'- aAGu---GCUUCGCCGUgCGGCaGAaCGc -5'
11041 5' -56.4 NC_002794.1 + 116874 0.68 0.822315
Target:  5'- gUCGCGcucgucaGGGgGGCgccgGCGCCGUCUccgGCGg -3'
miRNA:   3'- aAGUGC-------UUCgCCG----UGCGGCAGAa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 115053 0.67 0.88249
Target:  5'- --gGCGGcgGGCGGCAgCGCCGUCcaguccacggccucgGCGg -3'
miRNA:   3'- aagUGCU--UCGCCGU-GCGGCAGaa-------------CGC- -5'
11041 5' -56.4 NC_002794.1 + 110417 0.66 0.921637
Target:  5'- --gGCGAgagaagccgGGCGGCuguCGUCGUCggugGCGg -3'
miRNA:   3'- aagUGCU---------UCGCCGu--GCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 110270 0.73 0.551565
Target:  5'- gUCGCGAcGGCGGC-CGCCGUCcucggGCc -3'
miRNA:   3'- aAGUGCU-UCGCCGuGCGGCAGaa---CGc -5'
11041 5' -56.4 NC_002794.1 + 108450 0.66 0.927009
Target:  5'- cUCGCGGcGGCGGCcCGCCGgcaCggGCc -3'
miRNA:   3'- aAGUGCU-UCGCCGuGCGGCa--GaaCGc -5'
11041 5' -56.4 NC_002794.1 + 107876 0.75 0.456171
Target:  5'- aUCGCgGAGGCGGCGCGgCGgg-UGCGg -3'
miRNA:   3'- aAGUG-CUUCGCCGUGCgGCagaACGC- -5'
11041 5' -56.4 NC_002794.1 + 101810 0.73 0.551565
Target:  5'- gUUgGCGcAGCGGCGCGCCGUgc-GCGa -3'
miRNA:   3'- -AAgUGCuUCGCCGUGCGGCAgaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 100070 0.66 0.910193
Target:  5'- -aCGCuGGAGCuGGCGC-CCGUCUuccacguccgcgUGCGg -3'
miRNA:   3'- aaGUG-CUUCG-CCGUGcGGCAGA------------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 99920 0.67 0.863025
Target:  5'- aUCACGccguGCGGC--GUgGUCUUGCGg -3'
miRNA:   3'- aAGUGCuu--CGCCGugCGgCAGAACGC- -5'
11041 5' -56.4 NC_002794.1 + 97677 0.67 0.877592
Target:  5'- ---cUGGAGCGGUucgGCGCCGUCaacGCGc -3'
miRNA:   3'- aaguGCUUCGCCG---UGCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 95759 0.73 0.541699
Target:  5'- cUCGCGggGCGGCG-GCCG-CgacgGCGg -3'
miRNA:   3'- aAGUGCuuCGCCGUgCGGCaGaa--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.