miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11041 5' -56.4 NC_002794.1 + 91054 0.66 0.921637
Target:  5'- --gACGggGC-GCGCGUCGUCaUGUa -3'
miRNA:   3'- aagUGCuuCGcCGUGCGGCAGaACGc -5'
11041 5' -56.4 NC_002794.1 + 38677 0.66 0.926482
Target:  5'- -gCGCGAcccGCGGacggggucaccgcCGCGCCGUCgaGCGc -3'
miRNA:   3'- aaGUGCUu--CGCC-------------GUGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 82487 0.66 0.921637
Target:  5'- -cCGCGAcGCGGCcCGCCG-CgacGCGc -3'
miRNA:   3'- aaGUGCUuCGCCGuGCGGCaGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 19534 0.66 0.927009
Target:  5'- -gCGCGgcGCGGCcCGCCGg--UGuCGg -3'
miRNA:   3'- aaGUGCuuCGCCGuGCGGCagaAC-GC- -5'
11041 5' -56.4 NC_002794.1 + 12220 0.66 0.926482
Target:  5'- --gGCGGcgucGGCGGCgccggcgGCGCCGUCc-GCGg -3'
miRNA:   3'- aagUGCU----UCGCCG-------UGCGGCAGaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 92261 0.67 0.897826
Target:  5'- gUCGCu-GGCGGCgGCGCCGg---GCGa -3'
miRNA:   3'- aAGUGcuUCGCCG-UGCGGCagaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 13273 0.67 0.891302
Target:  5'- ---gUGGAGCGGC-CGCUGUUgacgGCGg -3'
miRNA:   3'- aaguGCUUCGCCGuGCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 99920 0.67 0.863025
Target:  5'- aUCACGccguGCGGC--GUgGUCUUGCGg -3'
miRNA:   3'- aAGUGCuu--CGCCGugCGgCAGAACGC- -5'
11041 5' -56.4 NC_002794.1 + 188786 0.67 0.870413
Target:  5'- --aGCGGuAGCGGCcggccccgccgaGCGCCGUCcagGCGc -3'
miRNA:   3'- aagUGCU-UCGCCG------------UGCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 68484 0.67 0.877592
Target:  5'- -gCACgGAGGCGGCcgaGCCGgccgUGCGg -3'
miRNA:   3'- aaGUG-CUUCGCCGug-CGGCaga-ACGC- -5'
11041 5' -56.4 NC_002794.1 + 97677 0.67 0.877592
Target:  5'- ---cUGGAGCGGUucgGCGCCGUCaacGCGc -3'
miRNA:   3'- aaguGCUUCGCCG---UGCGGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 144083 0.67 0.877592
Target:  5'- --gACGAGGUGGcCugGCUGUCccgcuugUGCGc -3'
miRNA:   3'- aagUGCUUCGCC-GugCGGCAGa------ACGC- -5'
11041 5' -56.4 NC_002794.1 + 141676 0.67 0.877592
Target:  5'- --aGCGAAGaCGGguCGCCGUac-GCGg -3'
miRNA:   3'- aagUGCUUC-GCCguGCGGCAgaaCGC- -5'
11041 5' -56.4 NC_002794.1 + 117359 0.67 0.884556
Target:  5'- aUCucguUGGAGCGGCGgGCCGcCU-GCa -3'
miRNA:   3'- aAGu---GCUUCGCCGUgCGGCaGAaCGc -5'
11041 5' -56.4 NC_002794.1 + 53893 0.67 0.890638
Target:  5'- gUCGgGAcuccGGCGGCGuccucguCGCCGUCggcgGCGc -3'
miRNA:   3'- aAGUgCU----UCGCCGU-------GCGGCAGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 115053 0.67 0.88249
Target:  5'- --gGCGGcgGGCGGCAgCGCCGUCcaguccacggccucgGCGg -3'
miRNA:   3'- aagUGCU--UCGCCGU-GCGGCAGaa-------------CGC- -5'
11041 5' -56.4 NC_002794.1 + 61559 0.67 0.884556
Target:  5'- -cCGCGGcGGCGGC-CGCCGUCg---- -3'
miRNA:   3'- aaGUGCU-UCGCCGuGCGGCAGaacgc -5'
11041 5' -56.4 NC_002794.1 + 41240 0.67 0.891302
Target:  5'- -cCACGccGCGGC-CGCCGaCgccgGCGg -3'
miRNA:   3'- aaGUGCuuCGCCGuGCGGCaGaa--CGC- -5'
11041 5' -56.4 NC_002794.1 + 55293 0.67 0.891302
Target:  5'- --gACGAGGgCGGCgGCGgCGUCgcgGCGg -3'
miRNA:   3'- aagUGCUUC-GCCG-UGCgGCAGaa-CGC- -5'
11041 5' -56.4 NC_002794.1 + 123008 0.67 0.891302
Target:  5'- cUgACGGGcCGGCugGCCGUCgUGUu -3'
miRNA:   3'- aAgUGCUUcGCCGugCGGCAGaACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.