miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 101008 0.66 0.620295
Target:  5'- cCGCGgGCCuuccugucgggggACGcgGG-CCgGGCGCGg -3'
miRNA:   3'- -GCGCgCGG-------------UGCuaCCgGGgCCGCGCg -5'
11042 3' -65 NC_002794.1 + 101475 0.66 0.618412
Target:  5'- gGCGCGCCcgcccgaaacgccgGCGGccGGUCCgagCGGUGCGg -3'
miRNA:   3'- gCGCGCGG--------------UGCUa-CCGGG---GCCGCGCg -5'
11042 3' -65 NC_002794.1 + 31902 0.66 0.615588
Target:  5'- gGCGCGUCGCuGAUGaGCgCCGacaggacguccagccGCGcCGCa -3'
miRNA:   3'- gCGCGCGGUG-CUAC-CGgGGC---------------CGC-GCG- -5'
11042 3' -65 NC_002794.1 + 24056 0.66 0.611824
Target:  5'- cCGCcCGCCcCGGaccacacccgUGcGCCCgGGCGgGCg -3'
miRNA:   3'- -GCGcGCGGuGCU----------AC-CGGGgCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 44419 0.66 0.611824
Target:  5'- gGCcgGCGCCGagc-GGCUcgacgacaCCGGCGCGCc -3'
miRNA:   3'- gCG--CGCGGUgcuaCCGG--------GGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 68909 0.66 0.611824
Target:  5'- -uCGCGUCGCGG-GGCUCgCGGCGUc- -3'
miRNA:   3'- gcGCGCGGUGCUaCCGGG-GCCGCGcg -5'
11042 3' -65 NC_002794.1 + 143310 0.66 0.611824
Target:  5'- aGCGCGgCGgGAUGGaagUCGGuCGCGUg -3'
miRNA:   3'- gCGCGCgGUgCUACCgg-GGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 115928 0.66 0.611824
Target:  5'- gGCGCgGCgGCGGgccGGCCCgCcGCGUGUc -3'
miRNA:   3'- gCGCG-CGgUGCUa--CCGGG-GcCGCGCG- -5'
11042 3' -65 NC_002794.1 + 83008 0.66 0.611824
Target:  5'- -aCGCGCC-CGAUcugcgccccGUCCCGGCGCcggGCg -3'
miRNA:   3'- gcGCGCGGuGCUAc--------CGGGGCCGCG---CG- -5'
11042 3' -65 NC_002794.1 + 121307 0.66 0.611824
Target:  5'- aCGUGCagauCgGCGGuUGGCCCUcgaGGCGcCGCg -3'
miRNA:   3'- -GCGCGc---GgUGCU-ACCGGGG---CCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 119551 0.66 0.611824
Target:  5'- cCGuCGCcgGCCACGu--GUCCCGGaGCGCc -3'
miRNA:   3'- -GC-GCG--CGGUGCuacCGGGGCCgCGCG- -5'
11042 3' -65 NC_002794.1 + 116942 0.66 0.611824
Target:  5'- gGCGUcCCcgGCGgcGGCgUCGGCGgGCg -3'
miRNA:   3'- gCGCGcGG--UGCuaCCGgGGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 184077 0.66 0.611824
Target:  5'- aCGCGC-CCACGGUguagcGGCagaaCGGCGaaCGCg -3'
miRNA:   3'- -GCGCGcGGUGCUA-----CCGgg--GCCGC--GCG- -5'
11042 3' -65 NC_002794.1 + 192658 0.66 0.611824
Target:  5'- cCGCGCGCUcgcGCGAcucgaaGCgCCGGC-CGCc -3'
miRNA:   3'- -GCGCGCGG---UGCUac----CGgGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 123126 0.66 0.602424
Target:  5'- uCGaGCGCCACGu---CCCCGucGUGCGCu -3'
miRNA:   3'- -GCgCGCGGUGCuaccGGGGC--CGCGCG- -5'
11042 3' -65 NC_002794.1 + 44328 0.66 0.602424
Target:  5'- aGCGCgGCgGCGAagaagacGGCgCCGGCgagaccgagaGCGCg -3'
miRNA:   3'- gCGCG-CGgUGCUa------CCGgGGCCG----------CGCG- -5'
11042 3' -65 NC_002794.1 + 46314 0.66 0.602424
Target:  5'- aGCGCgGCgGCGAcGGCgCCGuCGcCGCg -3'
miRNA:   3'- gCGCG-CGgUGCUaCCGgGGCcGC-GCG- -5'
11042 3' -65 NC_002794.1 + 82191 0.66 0.602424
Target:  5'- cCGgGCGCCcCGA--GCgCCCGGCacuccuucuGCGCu -3'
miRNA:   3'- -GCgCGCGGuGCUacCG-GGGCCG---------CGCG- -5'
11042 3' -65 NC_002794.1 + 154341 0.66 0.602424
Target:  5'- cCGgGUGCCGCGGccGaGCUCCcGCGCGg -3'
miRNA:   3'- -GCgCGCGGUGCUa-C-CGGGGcCGCGCg -5'
11042 3' -65 NC_002794.1 + 95087 0.66 0.602424
Target:  5'- --aGUGCUACGAggagcUGGCCgCGGUGCcCa -3'
miRNA:   3'- gcgCGCGGUGCU-----ACCGGgGCCGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.