Results 21 - 40 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11042 | 3' | -65 | NC_002794.1 | + | 95087 | 0.66 | 0.602424 |
Target: 5'- --aGUGCUACGAggagcUGGCCgCGGUGCcCa -3' miRNA: 3'- gcgCGCGGUGCU-----ACCGGgGCCGCGcG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 123126 | 0.66 | 0.602424 |
Target: 5'- uCGaGCGCCACGu---CCCCGucGUGCGCu -3' miRNA: 3'- -GCgCGCGGUGCuaccGGGGC--CGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 83008 | 0.66 | 0.611824 |
Target: 5'- -aCGCGCC-CGAUcugcgccccGUCCCGGCGCcggGCg -3' miRNA: 3'- gcGCGCGGuGCUAc--------CGGGGCCGCG---CG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 121307 | 0.66 | 0.611824 |
Target: 5'- aCGUGCagauCgGCGGuUGGCCCUcgaGGCGcCGCg -3' miRNA: 3'- -GCGCGc---GgUGCU-ACCGGGG---CCGC-GCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 119551 | 0.66 | 0.611824 |
Target: 5'- cCGuCGCcgGCCACGu--GUCCCGGaGCGCc -3' miRNA: 3'- -GC-GCG--CGGUGCuacCGGGGCCgCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 116942 | 0.66 | 0.611824 |
Target: 5'- gGCGUcCCcgGCGgcGGCgUCGGCGgGCg -3' miRNA: 3'- gCGCGcGG--UGCuaCCGgGGCCGCgCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 184077 | 0.66 | 0.611824 |
Target: 5'- aCGCGC-CCACGGUguagcGGCagaaCGGCGaaCGCg -3' miRNA: 3'- -GCGCGcGGUGCUA-----CCGgg--GCCGC--GCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 192658 | 0.66 | 0.611824 |
Target: 5'- cCGCGCGCUcgcGCGAcucgaaGCgCCGGC-CGCc -3' miRNA: 3'- -GCGCGCGG---UGCUac----CGgGGCCGcGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 101008 | 0.66 | 0.620295 |
Target: 5'- cCGCGgGCCuuccugucgggggACGcgGG-CCgGGCGCGg -3' miRNA: 3'- -GCGCgCGG-------------UGCuaCCgGGgCCGCGCg -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 101475 | 0.66 | 0.618412 |
Target: 5'- gGCGCGCCcgcccgaaacgccgGCGGccGGUCCgagCGGUGCGg -3' miRNA: 3'- gCGCGCGG--------------UGCUa-CCGGG---GCCGCGCg -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 115928 | 0.66 | 0.611824 |
Target: 5'- gGCGCgGCgGCGGgccGGCCCgCcGCGUGUc -3' miRNA: 3'- gCGCG-CGgUGCUa--CCGGG-GcCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 143310 | 0.66 | 0.611824 |
Target: 5'- aGCGCGgCGgGAUGGaagUCGGuCGCGUg -3' miRNA: 3'- gCGCGCgGUgCUACCgg-GGCC-GCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 44328 | 0.66 | 0.602424 |
Target: 5'- aGCGCgGCgGCGAagaagacGGCgCCGGCgagaccgagaGCGCg -3' miRNA: 3'- gCGCG-CGgUGCUa------CCGgGGCCG----------CGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 46314 | 0.66 | 0.602424 |
Target: 5'- aGCGCgGCgGCGAcGGCgCCGuCGcCGCg -3' miRNA: 3'- gCGCG-CGgUGCUaCCGgGGCcGC-GCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 82191 | 0.66 | 0.602424 |
Target: 5'- cCGgGCGCCcCGA--GCgCCCGGCacuccuucuGCGCu -3' miRNA: 3'- -GCgCGCGGuGCUacCG-GGGCCG---------CGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 154341 | 0.66 | 0.602424 |
Target: 5'- cCGgGUGCCGCGGccGaGCUCCcGCGCGg -3' miRNA: 3'- -GCgCGCGGUGCUa-C-CGGGGcCGCGCg -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 24056 | 0.66 | 0.611824 |
Target: 5'- cCGCcCGCCcCGGaccacacccgUGcGCCCgGGCGgGCg -3' miRNA: 3'- -GCGcGCGGuGCU----------AC-CGGGgCCGCgCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 112813 | 0.66 | 0.602424 |
Target: 5'- aGCGCagcgucugcucgGCCGcCGAguacGGCUgcucgUCGGCGCGCc -3' miRNA: 3'- gCGCG------------CGGU-GCUa---CCGG-----GGCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 44419 | 0.66 | 0.611824 |
Target: 5'- gGCcgGCGCCGagc-GGCUcgacgacaCCGGCGCGCc -3' miRNA: 3'- gCG--CGCGGUgcuaCCGG--------GGCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 68909 | 0.66 | 0.611824 |
Target: 5'- -uCGCGUCGCGG-GGCUCgCGGCGUc- -3' miRNA: 3'- gcGCGCGGUGCUaCCGGG-GCCGCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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