miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 192658 0.66 0.611824
Target:  5'- cCGCGCGCUcgcGCGAcucgaaGCgCCGGC-CGCc -3'
miRNA:   3'- -GCGCGCGG---UGCUac----CGgGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 101008 0.66 0.620295
Target:  5'- cCGCGgGCCuuccugucgggggACGcgGG-CCgGGCGCGg -3'
miRNA:   3'- -GCGCgCGG-------------UGCuaCCgGGgCCGCGCg -5'
11042 3' -65 NC_002794.1 + 101475 0.66 0.618412
Target:  5'- gGCGCGCCcgcccgaaacgccgGCGGccGGUCCgagCGGUGCGg -3'
miRNA:   3'- gCGCGCGG--------------UGCUa-CCGGG---GCCGCGCg -5'
11042 3' -65 NC_002794.1 + 31902 0.66 0.615588
Target:  5'- gGCGCGUCGCuGAUGaGCgCCGacaggacguccagccGCGcCGCa -3'
miRNA:   3'- gCGCGCGGUG-CUAC-CGgGGC---------------CGC-GCG- -5'
11042 3' -65 NC_002794.1 + 112813 0.66 0.602424
Target:  5'- aGCGCagcgucugcucgGCCGcCGAguacGGCUgcucgUCGGCGCGCc -3'
miRNA:   3'- gCGCG------------CGGU-GCUa---CCGG-----GGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 24056 0.66 0.611824
Target:  5'- cCGCcCGCCcCGGaccacacccgUGcGCCCgGGCGgGCg -3'
miRNA:   3'- -GCGcGCGGuGCU----------AC-CGGGgCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 190734 0.66 0.592106
Target:  5'- aCGCaGCGCCcgccgccgucucgACGggGGCggCGGCcGCGCg -3'
miRNA:   3'- -GCG-CGCGG-------------UGCuaCCGggGCCG-CGCG- -5'
11042 3' -65 NC_002794.1 + 94208 0.66 0.593043
Target:  5'- uGCGCuuGUgACGGUGGCggcgaCgGGCGgGCg -3'
miRNA:   3'- gCGCG--CGgUGCUACCGg----GgCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 182263 0.66 0.593043
Target:  5'- aGCGCGCCGaguccCGAgcGGCCUCccaugacggGGCGgGUg -3'
miRNA:   3'- gCGCGCGGU-----GCUa-CCGGGG---------CCGCgCG- -5'
11042 3' -65 NC_002794.1 + 108151 0.66 0.593043
Target:  5'- uCGC-CGCCGgGA--GCgCCGGCGCGa -3'
miRNA:   3'- -GCGcGCGGUgCUacCGgGGCCGCGCg -5'
11042 3' -65 NC_002794.1 + 141596 0.66 0.593043
Target:  5'- cCGCGuCGCCggGCGGcucGGCgaCCGGCuCGCg -3'
miRNA:   3'- -GCGC-GCGG--UGCUa--CCGg-GGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 111114 0.66 0.593043
Target:  5'- cCGUG-GCCGuCGAcGGCgCCGGCG-GCc -3'
miRNA:   3'- -GCGCgCGGU-GCUaCCGgGGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 12776 0.66 0.599607
Target:  5'- cCGcCGCGCUucggcgagaacgugACGAUcGGCCCgGGgccCGUGCu -3'
miRNA:   3'- -GC-GCGCGG--------------UGCUA-CCGGGgCC---GCGCG- -5'
11042 3' -65 NC_002794.1 + 95087 0.66 0.602424
Target:  5'- --aGUGCUACGAggagcUGGCCgCGGUGCcCa -3'
miRNA:   3'- gcgCGCGGUGCU-----ACCGGgGCCGCGcG- -5'
11042 3' -65 NC_002794.1 + 123126 0.66 0.602424
Target:  5'- uCGaGCGCCACGu---CCCCGucGUGCGCu -3'
miRNA:   3'- -GCgCGCGGUGCuaccGGGGC--CGCGCG- -5'
11042 3' -65 NC_002794.1 + 44328 0.66 0.602424
Target:  5'- aGCGCgGCgGCGAagaagacGGCgCCGGCgagaccgagaGCGCg -3'
miRNA:   3'- gCGCG-CGgUGCUa------CCGgGGCCG----------CGCG- -5'
11042 3' -65 NC_002794.1 + 46314 0.66 0.602424
Target:  5'- aGCGCgGCgGCGAcGGCgCCGuCGcCGCg -3'
miRNA:   3'- gCGCG-CGgUGCUaCCGgGGCcGC-GCG- -5'
11042 3' -65 NC_002794.1 + 82191 0.66 0.602424
Target:  5'- cCGgGCGCCcCGA--GCgCCCGGCacuccuucuGCGCu -3'
miRNA:   3'- -GCgCGCGGuGCUacCG-GGGCCG---------CGCG- -5'
11042 3' -65 NC_002794.1 + 154341 0.66 0.602424
Target:  5'- cCGgGUGCCGCGGccGaGCUCCcGCGCGg -3'
miRNA:   3'- -GCgCGCGGUGCUa-C-CGGGGcCGCGCg -5'
11042 3' -65 NC_002794.1 + 147076 0.67 0.555813
Target:  5'- gCGgGCGCCcgguccaaggACGAaGGCgUCGGCGCcCg -3'
miRNA:   3'- -GCgCGCGG----------UGCUaCCGgGGCCGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.