miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 55878 0.67 0.546605
Target:  5'- uGCGCGCCcagugcACGAucaUGGCgUUGGUGCa- -3'
miRNA:   3'- gCGCGCGG------UGCU---ACCGgGGCCGCGcg -5'
11042 3' -65 NC_002794.1 + 184813 0.67 0.537446
Target:  5'- aGCaGCGUCACGG-GGCacgcgUCCGG-GCGCa -3'
miRNA:   3'- gCG-CGCGGUGCUaCCG-----GGGCCgCGCG- -5'
11042 3' -65 NC_002794.1 + 8756 0.67 0.537446
Target:  5'- gGCGUGUCGCGAcGGCgugaagaCGGCGUGg -3'
miRNA:   3'- gCGCGCGGUGCUaCCGgg-----GCCGCGCg -5'
11042 3' -65 NC_002794.1 + 16522 0.67 0.546605
Target:  5'- gGCGuCGCCAccgccgucccCGgcGuCCCCGGCGuCGCc -3'
miRNA:   3'- gCGC-GCGGU----------GCuaCcGGGGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 124397 0.67 0.537446
Target:  5'- gGCGCGUCGCc--GGUCgUCGGgGCGCc -3'
miRNA:   3'- gCGCGCGGUGcuaCCGG-GGCCgCGCG- -5'
11042 3' -65 NC_002794.1 + 145542 0.67 0.537446
Target:  5'- uCGgGCGCCcCGAgcGGCCcgaCCGGUuCGCg -3'
miRNA:   3'- -GCgCGCGGuGCUa-CCGG---GGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 150291 0.67 0.537446
Target:  5'- -aCGCGCCGgugUGGUGGCagcggaucaCCGGcCGCGUc -3'
miRNA:   3'- gcGCGCGGU---GCUACCGg--------GGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 67852 0.67 0.537446
Target:  5'- gGCGcCGCCGCGcgucaCCCGGCGC-Ca -3'
miRNA:   3'- gCGC-GCGGUGCuaccgGGGCCGCGcG- -5'
11042 3' -65 NC_002794.1 + 55641 0.67 0.546605
Target:  5'- aCGCGgGCCggcagGCGca-GCCCCgacauGGUGCGCg -3'
miRNA:   3'- -GCGCgCGG-----UGCuacCGGGG-----CCGCGCG- -5'
11042 3' -65 NC_002794.1 + 13770 0.67 0.546605
Target:  5'- cCGCcccggaGCCACccgGGUGGCUCCGGC-CGUc -3'
miRNA:   3'- -GCGcg----CGGUG---CUACCGGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 131876 0.67 0.546605
Target:  5'- uGgGCGCCGC---GGCCUcaucuCGGuCGCGCg -3'
miRNA:   3'- gCgCGCGGUGcuaCCGGG-----GCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 147076 0.67 0.555813
Target:  5'- gCGgGCGCCcgguccaaggACGAaGGCgUCGGCGCcCg -3'
miRNA:   3'- -GCgCGCGG----------UGCUaCCGgGGCCGCGcG- -5'
11042 3' -65 NC_002794.1 + 88060 0.67 0.555813
Target:  5'- aCGCGCG-CGCGAgggggcggGGCCgCGGUuugaacgggGCGUg -3'
miRNA:   3'- -GCGCGCgGUGCUa-------CCGGgGCCG---------CGCG- -5'
11042 3' -65 NC_002794.1 + 126381 0.67 0.555813
Target:  5'- uGgGCGCCGg---GGCCUgcgcggCGGCGUGCg -3'
miRNA:   3'- gCgCGCGGUgcuaCCGGG------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 92258 0.67 0.555813
Target:  5'- gGCGuCGCUgGCGgcGGCgCCgggcgaGGCGCGCa -3'
miRNA:   3'- gCGC-GCGG-UGCuaCCGgGG------CCGCGCG- -5'
11042 3' -65 NC_002794.1 + 14475 0.67 0.549363
Target:  5'- gGCGCGCCGCGcucgcuguucgcggcGgcGGCCCgcgcucgCGGCGCu- -3'
miRNA:   3'- gCGCGCGGUGC---------------Ua-CCGGG-------GCCGCGcg -5'
11042 3' -65 NC_002794.1 + 187909 0.67 0.546605
Target:  5'- cCGCuCGCC-CGccgGGCCCCGcCGCGa -3'
miRNA:   3'- -GCGcGCGGuGCua-CCGGGGCcGCGCg -5'
11042 3' -65 NC_002794.1 + 150542 0.67 0.546605
Target:  5'- gGCcgGCGCCAUGGccGUCUCGGCGCu- -3'
miRNA:   3'- gCG--CGCGGUGCUacCGGGGCCGCGcg -5'
11042 3' -65 NC_002794.1 + 50581 0.67 0.546605
Target:  5'- gCGUGCGCgGCGGcUGGgUggCCGGCGC-Cg -3'
miRNA:   3'- -GCGCGCGgUGCU-ACCgG--GGCCGCGcG- -5'
11042 3' -65 NC_002794.1 + 70663 0.67 0.537446
Target:  5'- uCGUGCGCgGCGGccGCCgCGGCG-GUg -3'
miRNA:   3'- -GCGCGCGgUGCUacCGGgGCCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.