miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 267 0.85 0.03974
Target:  5'- gCGCGCGCggaCGCGAggacggcGGCCCUGGCGCGCc -3'
miRNA:   3'- -GCGCGCG---GUGCUa------CCGGGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 92317 0.81 0.070476
Target:  5'- gCGCGgGCgGCGggGGCCCgGGCGgGCg -3'
miRNA:   3'- -GCGCgCGgUGCuaCCGGGgCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 145399 0.81 0.073857
Target:  5'- gGCGCGCCGCGc-GGCCUuaaagcgCGGCGCGCc -3'
miRNA:   3'- gCGCGCGGUGCuaCCGGG-------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 143701 0.8 0.081691
Target:  5'- uCGCGuUGCCcacCGcgGGCCCCGGCGgGCg -3'
miRNA:   3'- -GCGC-GCGGu--GCuaCCGGGGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 189819 0.79 0.093224
Target:  5'- gGCGCGCCACGAUcaaccgccacagcggGGUCUCGGC-CGCg -3'
miRNA:   3'- gCGCGCGGUGCUA---------------CCGGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 99802 0.79 0.09232
Target:  5'- gCGCGCGCCGCG--GGCgCCGGCGcCGUc -3'
miRNA:   3'- -GCGCGCGGUGCuaCCGgGGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 182997 0.78 0.109419
Target:  5'- gGCGCuucGCCGCGGgcGCCCCGcGCGCGCc -3'
miRNA:   3'- gCGCG---CGGUGCUacCGGGGC-CGCGCG- -5'
11042 3' -65 NC_002794.1 + 184450 0.78 0.123406
Target:  5'- aGCGCGCCGCugccgcccGcgGGCCgcgcgaaCGGCGCGCg -3'
miRNA:   3'- gCGCGCGGUG--------CuaCCGGg------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 19423 0.78 0.109155
Target:  5'- gGCGCGCCcuccuccGCGAccaGGCCCCGaGCGgGCa -3'
miRNA:   3'- gCGCGCGG-------UGCUa--CCGGGGC-CGCgCG- -5'
11042 3' -65 NC_002794.1 + 49013 0.77 0.139037
Target:  5'- -cCGCGCCGCGgcGGCCgCGGCGuCGUc -3'
miRNA:   3'- gcGCGCGGUGCuaCCGGgGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 60642 0.77 0.135772
Target:  5'- gGCGCcgGCgGCGccGGCcaCCCGGCGCGCg -3'
miRNA:   3'- gCGCG--CGgUGCuaCCG--GGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 122326 0.77 0.142374
Target:  5'- uGCGCGUgGCGuUGGCCCUGGC-CGUc -3'
miRNA:   3'- gCGCGCGgUGCuACCGGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 66852 0.77 0.142374
Target:  5'- cCGUcgGCGCgGCGA-GGCCgCGGCGUGCg -3'
miRNA:   3'- -GCG--CGCGgUGCUaCCGGgGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 101231 0.77 0.139037
Target:  5'- uCGUGC-CCACGuuucGCUCCGGCGCGCa -3'
miRNA:   3'- -GCGCGcGGUGCuac-CGGGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 71206 0.76 0.152829
Target:  5'- gCGCGUGCUcguCGAaGGUCCCGGcCGCGUa -3'
miRNA:   3'- -GCGCGCGGu--GCUaCCGGGGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 23691 0.76 0.166679
Target:  5'- -aCGCGCCGcCGA-GGCCCCGaagcgucccgaaccGCGCGCg -3'
miRNA:   3'- gcGCGCGGU-GCUaCCGGGGC--------------CGCGCG- -5'
11042 3' -65 NC_002794.1 + 90472 0.76 0.160181
Target:  5'- cCGCGCGCgGCGG-GGCCgCCGuccCGCGCg -3'
miRNA:   3'- -GCGCGCGgUGCUaCCGG-GGCc--GCGCG- -5'
11042 3' -65 NC_002794.1 + 90216 0.76 0.166679
Target:  5'- cCGCcCGCCGCGccggagccccgccuGUGGUCCCcGCGCGCg -3'
miRNA:   3'- -GCGcGCGGUGC--------------UACCGGGGcCGCGCG- -5'
11042 3' -65 NC_002794.1 + 99238 0.76 0.159806
Target:  5'- aGCGgaccgccggacccCGCCGCGGaggggcucgggGGCUCCGGCGCGCu -3'
miRNA:   3'- gCGC-------------GCGGUGCUa----------CCGGGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 116821 0.76 0.16785
Target:  5'- gCGCGgGUCGCucUGGUCCCGGgaCGCGCg -3'
miRNA:   3'- -GCGCgCGGUGcuACCGGGGCC--GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.