miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 183357 0.74 0.226113
Target:  5'- aGCGCGCCG-GAccccaGGUCCCGGcCGUGCc -3'
miRNA:   3'- gCGCGCGGUgCUa----CCGGGGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 194153 0.74 0.226113
Target:  5'- aGCGC-CCGCGA--GCCcugCCGGCGCGCc -3'
miRNA:   3'- gCGCGcGGUGCUacCGG---GGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 106393 0.73 0.247218
Target:  5'- gGCGgGCgaACGGUcGGaCCCCGGCgGCGCc -3'
miRNA:   3'- gCGCgCGg-UGCUA-CC-GGGGCCG-CGCG- -5'
11042 3' -65 NC_002794.1 + 71781 0.73 0.236468
Target:  5'- cCGuCGCGCgGCGAgucgccCCCCGGCGgGCg -3'
miRNA:   3'- -GC-GCGCGgUGCUacc---GGGGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 101429 0.73 0.258369
Target:  5'- gGCuGCGCgACGAUccggGGaCgCCGGCGCGCc -3'
miRNA:   3'- gCG-CGCGgUGCUA----CC-GgGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 149683 0.73 0.241256
Target:  5'- uCGCGCucgacugGCCGCGggGGCCgCCuGGCGgGUg -3'
miRNA:   3'- -GCGCG-------CGGUGCuaCCGG-GG-CCGCgCG- -5'
11042 3' -65 NC_002794.1 + 62782 0.73 0.241793
Target:  5'- cCGCGCGCCGCcuccgGGCCCCuaccucuccGGCaCGCc -3'
miRNA:   3'- -GCGCGCGGUGcua--CCGGGG---------CCGcGCG- -5'
11042 3' -65 NC_002794.1 + 32298 0.73 0.231242
Target:  5'- cCGC-CGCCGCGgcGGCCgcgCCGGC-CGCg -3'
miRNA:   3'- -GCGcGCGGUGCuaCCGG---GGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 192401 0.73 0.238586
Target:  5'- cCGCGCcgggguagucgaaacGCCGCGAcgGGUCCgCGGCcgGCGCg -3'
miRNA:   3'- -GCGCG---------------CGGUGCUa-CCGGG-GCCG--CGCG- -5'
11042 3' -65 NC_002794.1 + 91568 0.73 0.240185
Target:  5'- aGCcgGCGCCGCuGAugaacuacuccgagUGGCCgCUGGUGCGCg -3'
miRNA:   3'- gCG--CGCGGUG-CU--------------ACCGG-GGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 59503 0.73 0.24558
Target:  5'- -cUGCGCCACGAcGGCggcuucccgcugcaCCCGGCGCugGCg -3'
miRNA:   3'- gcGCGCGGUGCUaCCG--------------GGGCCGCG--CG- -5'
11042 3' -65 NC_002794.1 + 105407 0.73 0.241793
Target:  5'- cCGCGCGgaucucggccuCCAgGGUGGCCgCCGcCGCGCc -3'
miRNA:   3'- -GCGCGC-----------GGUgCUACCGG-GGCcGCGCG- -5'
11042 3' -65 NC_002794.1 + 126628 0.73 0.236468
Target:  5'- gGCGUGagCGCGAccgGGCgCCCGGaCGCGCc -3'
miRNA:   3'- gCGCGCg-GUGCUa--CCG-GGGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 94282 0.73 0.247218
Target:  5'- gGCGCgGCCcgaGCGGggggcGGCUCgGGCGCGCc -3'
miRNA:   3'- gCGCG-CGG---UGCUa----CCGGGgCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 39649 0.73 0.233321
Target:  5'- uCGC-CGCCugGGUGGUCUucgcccucugccgcgCGGUGCGCu -3'
miRNA:   3'- -GCGcGCGGugCUACCGGG---------------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 59204 0.73 0.247218
Target:  5'- aCGCGCacGUCgGCGucucGGCCgCGGCGCGCg -3'
miRNA:   3'- -GCGCG--CGG-UGCua--CCGGgGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 36334 0.73 0.258369
Target:  5'- gGCGCGCaguCGAgcaaCCCGGCGUGCg -3'
miRNA:   3'- gCGCGCGgu-GCUaccgGGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 66729 0.72 0.300641
Target:  5'- cCGCcacCGCCgGCGGUGGCggCGGCGCGUa -3'
miRNA:   3'- -GCGc--GCGG-UGCUACCGggGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 104442 0.72 0.264097
Target:  5'- aCGC-CGCCGCGGgcGGCCCgagcccgggCGGCGUGUg -3'
miRNA:   3'- -GCGcGCGGUGCUa-CCGGG---------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 101797 0.72 0.300641
Target:  5'- uGCuGCGCCGCuGGuUGGCgCagCGGCGCGCc -3'
miRNA:   3'- gCG-CGCGGUG-CU-ACCG-Gg-GCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.