miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 80524 0.72 0.288042
Target:  5'- gGCGCGCgACGccUGGCaCCGGCGCc- -3'
miRNA:   3'- gCGCGCGgUGCu-ACCGgGGCCGCGcg -5'
11042 3' -65 NC_002794.1 + 104442 0.72 0.264097
Target:  5'- aCGC-CGCCGCGGgcGGCCCgagcccgggCGGCGUGUg -3'
miRNA:   3'- -GCGcGCGGUGCUa-CCGGG---------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 56302 0.72 0.26934
Target:  5'- gCGCGCGCgguCGCGGUcgcuggcGGCCguggCCGGCGaCGCg -3'
miRNA:   3'- -GCGCGCG---GUGCUA-------CCGG----GGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 72455 0.72 0.2819
Target:  5'- gGCGCcCCGCGcccGGCCCCgcGGCgGCGCc -3'
miRNA:   3'- gCGCGcGGUGCua-CCGGGG--CCG-CGCG- -5'
11042 3' -65 NC_002794.1 + 21719 0.72 0.2819
Target:  5'- gCGCuGCGUCGCGAUcgcgaGGCCgaagCGGUGCGCc -3'
miRNA:   3'- -GCG-CGCGGUGCUA-----CCGGg---GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 184570 0.72 0.275862
Target:  5'- aCGCGcCGCCGCGgcGGCggCGGCcacGCGCg -3'
miRNA:   3'- -GCGC-GCGGUGCuaCCGggGCCG---CGCG- -5'
11042 3' -65 NC_002794.1 + 144405 0.72 0.288042
Target:  5'- aGUGCGUCGCGcUGGgCCCGaGCGCccuGCu -3'
miRNA:   3'- gCGCGCGGUGCuACCgGGGC-CGCG---CG- -5'
11042 3' -65 NC_002794.1 + 186940 0.72 0.288042
Target:  5'- cCGC-CGCCACGGcccccgggccgcUGGCCgCCGccuccagcaGCGCGCg -3'
miRNA:   3'- -GCGcGCGGUGCU------------ACCGG-GGC---------CGCGCG- -5'
11042 3' -65 NC_002794.1 + 66729 0.72 0.300641
Target:  5'- cCGCcacCGCCgGCGGUGGCggCGGCGCGUa -3'
miRNA:   3'- -GCGc--GCGG-UGCUACCGggGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 107755 0.72 0.281291
Target:  5'- uCGCGCGCCGC--UGGCuggagcgcgcucgCCCGGCGacgacCGCg -3'
miRNA:   3'- -GCGCGCGGUGcuACCG-------------GGGCCGC-----GCG- -5'
11042 3' -65 NC_002794.1 + 186480 0.72 0.294289
Target:  5'- -uCGCuCCugGAgGGCCCggCGGCGCGCc -3'
miRNA:   3'- gcGCGcGGugCUaCCGGG--GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 94423 0.72 0.269928
Target:  5'- gGCGCGCC-CGAcaaccuggaGGCCUaCGGCGCGg -3'
miRNA:   3'- gCGCGCGGuGCUa--------CCGGG-GCCGCGCg -5'
11042 3' -65 NC_002794.1 + 101797 0.72 0.300641
Target:  5'- uGCuGCGCCGCuGGuUGGCgCagCGGCGCGCc -3'
miRNA:   3'- gCG-CGCGGUG-CU-ACCG-Gg-GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 180612 0.72 0.275862
Target:  5'- cCGCGgGCCACGAcacggcGGCCCaccCGCGCu -3'
miRNA:   3'- -GCGCgCGGUGCUa-----CCGGGgccGCGCG- -5'
11042 3' -65 NC_002794.1 + 184046 0.72 0.275862
Target:  5'- aGCGCGCgGuCGcgGGCCgCGGCGaaGCg -3'
miRNA:   3'- gCGCGCGgU-GCuaCCGGgGCCGCg-CG- -5'
11042 3' -65 NC_002794.1 + 72369 0.72 0.2819
Target:  5'- uGCGCGuCCGC---GGCCCCGGC-CGUc -3'
miRNA:   3'- gCGCGC-GGUGcuaCCGGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 34715 0.72 0.300641
Target:  5'- cCGCcgGCGCCACGA-GGCgCgGGCGgcCGCa -3'
miRNA:   3'- -GCG--CGCGGUGCUaCCGgGgCCGC--GCG- -5'
11042 3' -65 NC_002794.1 + 117634 0.71 0.313
Target:  5'- gGCGcCGaCCGCGc-GGCCCCGGacgaagagcgccaCGCGCg -3'
miRNA:   3'- gCGC-GC-GGUGCuaCCGGGGCC-------------GCGCG- -5'
11042 3' -65 NC_002794.1 + 38440 0.71 0.320329
Target:  5'- gGCGgGCCGgacugaggagcCGGcgcGGCCgCGGCGCGCc -3'
miRNA:   3'- gCGCgCGGU-----------GCUa--CCGGgGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 145194 0.71 0.307098
Target:  5'- gGU-CGCCGCGgcGGCCcuCCGGCaGCGCu -3'
miRNA:   3'- gCGcGCGGUGCuaCCGG--GGCCG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.