miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 56153 0.76 0.163975
Target:  5'- gGCGUGCCgcaGCGGcagcGGCCCCGGUGCa- -3'
miRNA:   3'- gCGCGCGG---UGCUa---CCGGGGCCGCGcg -5'
11042 3' -65 NC_002794.1 + 112336 0.76 0.163975
Target:  5'- aGCGCGCCGgcCGgcGGCgCCGGCG-GCg -3'
miRNA:   3'- gCGCGCGGU--GCuaCCGgGGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 90216 0.76 0.166679
Target:  5'- cCGCcCGCCGCGccggagccccgccuGUGGUCCCcGCGCGCg -3'
miRNA:   3'- -GCGcGCGGUGC--------------UACCGGGGcCGCGCG- -5'
11042 3' -65 NC_002794.1 + 23691 0.76 0.166679
Target:  5'- -aCGCGCCGcCGA-GGCCCCGaagcgucccgaaccGCGCGCg -3'
miRNA:   3'- gcGCGCGGU-GCUaCCGGGGC--------------CGCGCG- -5'
11042 3' -65 NC_002794.1 + 116821 0.76 0.16785
Target:  5'- gCGCGgGUCGCucUGGUCCCGGgaCGCGCg -3'
miRNA:   3'- -GCGCgCGGUGcuACCGGGGCC--GCGCG- -5'
11042 3' -65 NC_002794.1 + 35559 0.75 0.175847
Target:  5'- uCGCGCGCgCGCGugGUGGCCCaGGCGUucuuccGCa -3'
miRNA:   3'- -GCGCGCG-GUGC--UACCGGGgCCGCG------CG- -5'
11042 3' -65 NC_002794.1 + 141305 0.75 0.175847
Target:  5'- gGCGCGCCgGCGAcGGCaCCGGCGUcgGCu -3'
miRNA:   3'- gCGCGCGG-UGCUaCCGgGGCCGCG--CG- -5'
11042 3' -65 NC_002794.1 + 67321 0.75 0.188478
Target:  5'- uCGCGCccguacaucGCCAgGGU-GCCCCGGCGcCGCc -3'
miRNA:   3'- -GCGCG---------CGGUgCUAcCGGGGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 41910 0.75 0.190221
Target:  5'- aGCGCGCCACGAgccccucgugggccaGCCCgaagugcacgcccuCGGCGUGCg -3'
miRNA:   3'- gCGCGCGGUGCUac-------------CGGG--------------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 113875 0.74 0.197336
Target:  5'- gGCGCGCUc----GGCCgCGGCGCGCg -3'
miRNA:   3'- gCGCGCGGugcuaCCGGgGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 151949 0.74 0.197336
Target:  5'- cCGCcCGCgACGAcGGCCCCGG-GUGCu -3'
miRNA:   3'- -GCGcGCGgUGCUaCCGGGGCCgCGCG- -5'
11042 3' -65 NC_002794.1 + 184500 0.74 0.197336
Target:  5'- aCGCccGgGCgGCGcgGGCCCCG-CGCGCg -3'
miRNA:   3'- -GCG--CgCGgUGCuaCCGGGGCcGCGCG- -5'
11042 3' -65 NC_002794.1 + 117724 0.74 0.20144
Target:  5'- cCGCGUcugcuccacguagGCCugGAUGGUCCgcgcgUGGUGCGCa -3'
miRNA:   3'- -GCGCG-------------CGGugCUACCGGG-----GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 12018 0.74 0.2019
Target:  5'- uGUGCGCCGCc--GGCCCgGGCGUccGCg -3'
miRNA:   3'- gCGCGCGGUGcuaCCGGGgCCGCG--CG- -5'
11042 3' -65 NC_002794.1 + 84953 0.74 0.2019
Target:  5'- aGCGCccccgGCaCGCGGauccuUGGCCCCGGC-CGCg -3'
miRNA:   3'- gCGCG-----CG-GUGCU-----ACCGGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 38699 0.74 0.2019
Target:  5'- cCGcCGCGCCGuCGAgcGCCCCGGC-CGCc -3'
miRNA:   3'- -GC-GCGCGGU-GCUacCGGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 82804 0.74 0.206555
Target:  5'- aCGCGCGCCGCGA---CCCgCGGCuCGCu -3'
miRNA:   3'- -GCGCGCGGUGCUaccGGG-GCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 26074 0.74 0.214682
Target:  5'- cCGCGCacGCCACGcggggcagcgccgacGGCCCCGGCGauCGCc -3'
miRNA:   3'- -GCGCG--CGGUGCua-------------CCGGGGCCGC--GCG- -5'
11042 3' -65 NC_002794.1 + 102163 0.74 0.221081
Target:  5'- uGCGCGCCGg---GGCCaucgUGGCGCGCg -3'
miRNA:   3'- gCGCGCGGUgcuaCCGGg---GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 139468 0.74 0.223082
Target:  5'- uCGUGCGCCAgGAcggugguguagaugGGCgCgGGCGCGCu -3'
miRNA:   3'- -GCGCGCGGUgCUa-------------CCGgGgCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.