Results 41 - 60 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11042 | 3' | -65 | NC_002794.1 | + | 183357 | 0.74 | 0.226113 |
Target: 5'- aGCGCGCCG-GAccccaGGUCCCGGcCGUGCc -3' miRNA: 3'- gCGCGCGGUgCUa----CCGGGGCC-GCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 194153 | 0.74 | 0.226113 |
Target: 5'- aGCGC-CCGCGA--GCCcugCCGGCGCGCc -3' miRNA: 3'- gCGCGcGGUGCUacCGG---GGCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 32298 | 0.73 | 0.231242 |
Target: 5'- cCGC-CGCCGCGgcGGCCgcgCCGGC-CGCg -3' miRNA: 3'- -GCGcGCGGUGCuaCCGG---GGCCGcGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 39649 | 0.73 | 0.233321 |
Target: 5'- uCGC-CGCCugGGUGGUCUucgcccucugccgcgCGGUGCGCu -3' miRNA: 3'- -GCGcGCGGugCUACCGGG---------------GCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 71781 | 0.73 | 0.236468 |
Target: 5'- cCGuCGCGCgGCGAgucgccCCCCGGCGgGCg -3' miRNA: 3'- -GC-GCGCGgUGCUacc---GGGGCCGCgCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 126628 | 0.73 | 0.236468 |
Target: 5'- gGCGUGagCGCGAccgGGCgCCCGGaCGCGCc -3' miRNA: 3'- gCGCGCg-GUGCUa--CCG-GGGCC-GCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 192401 | 0.73 | 0.238586 |
Target: 5'- cCGCGCcgggguagucgaaacGCCGCGAcgGGUCCgCGGCcgGCGCg -3' miRNA: 3'- -GCGCG---------------CGGUGCUa-CCGGG-GCCG--CGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 91568 | 0.73 | 0.240185 |
Target: 5'- aGCcgGCGCCGCuGAugaacuacuccgagUGGCCgCUGGUGCGCg -3' miRNA: 3'- gCG--CGCGGUG-CU--------------ACCGG-GGCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 149683 | 0.73 | 0.241256 |
Target: 5'- uCGCGCucgacugGCCGCGggGGCCgCCuGGCGgGUg -3' miRNA: 3'- -GCGCG-------CGGUGCuaCCGG-GG-CCGCgCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 62782 | 0.73 | 0.241793 |
Target: 5'- cCGCGCGCCGCcuccgGGCCCCuaccucuccGGCaCGCc -3' miRNA: 3'- -GCGCGCGGUGcua--CCGGGG---------CCGcGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 105407 | 0.73 | 0.241793 |
Target: 5'- cCGCGCGgaucucggccuCCAgGGUGGCCgCCGcCGCGCc -3' miRNA: 3'- -GCGCGC-----------GGUgCUACCGG-GGCcGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 59503 | 0.73 | 0.24558 |
Target: 5'- -cUGCGCCACGAcGGCggcuucccgcugcaCCCGGCGCugGCg -3' miRNA: 3'- gcGCGCGGUGCUaCCG--------------GGGCCGCG--CG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 106393 | 0.73 | 0.247218 |
Target: 5'- gGCGgGCgaACGGUcGGaCCCCGGCgGCGCc -3' miRNA: 3'- gCGCgCGg-UGCUA-CC-GGGGCCG-CGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 94282 | 0.73 | 0.247218 |
Target: 5'- gGCGCgGCCcgaGCGGggggcGGCUCgGGCGCGCc -3' miRNA: 3'- gCGCG-CGG---UGCUa----CCGGGgCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 59204 | 0.73 | 0.247218 |
Target: 5'- aCGCGCacGUCgGCGucucGGCCgCGGCGCGCg -3' miRNA: 3'- -GCGCG--CGG-UGCua--CCGGgGCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 36334 | 0.73 | 0.258369 |
Target: 5'- gGCGCGCaguCGAgcaaCCCGGCGUGCg -3' miRNA: 3'- gCGCGCGgu-GCUaccgGGGCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 101429 | 0.73 | 0.258369 |
Target: 5'- gGCuGCGCgACGAUccggGGaCgCCGGCGCGCc -3' miRNA: 3'- gCG-CGCGgUGCUA----CC-GgGGCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 108377 | 0.72 | 0.264097 |
Target: 5'- cCGgGCGCCggagcggggaGCGGaGGCUCCGGCG-GCg -3' miRNA: 3'- -GCgCGCGG----------UGCUaCCGGGGCCGCgCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 104442 | 0.72 | 0.264097 |
Target: 5'- aCGC-CGCCGCGGgcGGCCCgagcccgggCGGCGUGUg -3' miRNA: 3'- -GCGcGCGGUGCUa-CCGGG---------GCCGCGCG- -5' |
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11042 | 3' | -65 | NC_002794.1 | + | 125641 | 0.72 | 0.264097 |
Target: 5'- uGCGCcuaGCgGCGuucuGCCUCGGCGCGCu -3' miRNA: 3'- gCGCG---CGgUGCuac-CGGGGCCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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