miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 63911 0.66 0.574359
Target:  5'- uCGCucGCGCCGCGAccGCcgCCCGGCcgGCGa -3'
miRNA:   3'- -GCG--CGCGGUGCUacCG--GGGCCG--CGCg -5'
11042 3' -65 NC_002794.1 + 12727 0.66 0.574359
Target:  5'- cCGCG-GCgACGA-GGgCCCGGUcCGCu -3'
miRNA:   3'- -GCGCgCGgUGCUaCCgGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 108308 0.66 0.574359
Target:  5'- cCGuUGCGCCgGCGGUgGGUCUuggaCGGCgGCGCa -3'
miRNA:   3'- -GC-GCGCGG-UGCUA-CCGGG----GCCG-CGCG- -5'
11042 3' -65 NC_002794.1 + 187587 0.66 0.574359
Target:  5'- gGCGCgGCCGCcGUcGCgacgCCCGGCGuCGCc -3'
miRNA:   3'- gCGCG-CGGUGcUAcCG----GGGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 140004 0.66 0.574359
Target:  5'- gGUGCggguggagGCCGCGGaGGCCgCGGCcccCGCg -3'
miRNA:   3'- gCGCG--------CGGUGCUaCCGGgGCCGc--GCG- -5'
11042 3' -65 NC_002794.1 + 58564 0.66 0.573428
Target:  5'- gGCGCGCUgcGCGAacGCCUacuuccaccagcgCGGCGgGCu -3'
miRNA:   3'- gCGCGCGG--UGCUacCGGG-------------GCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 65238 0.66 0.571567
Target:  5'- gGCGguCGCCGCGgcGGCgaUCCGGCcucgccgagcggcgGCGCc -3'
miRNA:   3'- gCGC--GCGGUGCuaCCG--GGGCCG--------------CGCG- -5'
11042 3' -65 NC_002794.1 + 94490 0.66 0.565066
Target:  5'- aCGCG-GCCGCG--GGCCgUGGCGgGg -3'
miRNA:   3'- -GCGCgCGGUGCuaCCGGgGCCGCgCg -5'
11042 3' -65 NC_002794.1 + 80434 0.66 0.565066
Target:  5'- gGC-CGCCGcCGgcGGCCgCCGGCcCGUc -3'
miRNA:   3'- gCGcGCGGU-GCuaCCGG-GGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 71145 0.66 0.565066
Target:  5'- aGCGgGCUGUGcc-GCCCCGGCaaGCGCa -3'
miRNA:   3'- gCGCgCGGUGCuacCGGGGCCG--CGCG- -5'
11042 3' -65 NC_002794.1 + 2605 0.66 0.565066
Target:  5'- aGCaUGgCACcuacccGGCCgCCGGCGCGCg -3'
miRNA:   3'- gCGcGCgGUGcua---CCGG-GGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 79804 0.66 0.565066
Target:  5'- aGCGCaaccGCCGCGAccacgccgagUGGCgCCaGGUGaCGCc -3'
miRNA:   3'- gCGCG----CGGUGCU----------ACCGgGG-CCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 330 0.66 0.565066
Target:  5'- gCGCGCGCCGcCGAcaGCCC--GCGCGa -3'
miRNA:   3'- -GCGCGCGGU-GCUacCGGGgcCGCGCg -5'
11042 3' -65 NC_002794.1 + 114755 0.66 0.565066
Target:  5'- cCGCcCGCCgGCGccGGUCCuCGGCG-GCg -3'
miRNA:   3'- -GCGcGCGG-UGCuaCCGGG-GCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 188333 0.66 0.565066
Target:  5'- uCGC-CGCCGcCGgcGGCgCCGuCGCGCc -3'
miRNA:   3'- -GCGcGCGGU-GCuaCCGgGGCcGCGCG- -5'
11042 3' -65 NC_002794.1 + 183468 0.66 0.565066
Target:  5'- cCGCcCGCCGCGAguccgcGGCCCgaucccCGCGCg -3'
miRNA:   3'- -GCGcGCGGUGCUa-----CCGGGgcc---GCGCG- -5'
11042 3' -65 NC_002794.1 + 23605 0.66 0.565066
Target:  5'- cCGCcgaccCGaCCcCGcgGGCgCCCGGaCGCGCg -3'
miRNA:   3'- -GCGc----GC-GGuGCuaCCG-GGGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 185459 0.66 0.564139
Target:  5'- cCGCGacaaaCGCCGCGGgcggcGGCCgCGGCGaggggacCGCc -3'
miRNA:   3'- -GCGC-----GCGGUGCUa----CCGGgGCCGC-------GCG- -5'
11042 3' -65 NC_002794.1 + 811 0.66 0.562286
Target:  5'- gGCG-GUCGgGAgggGGCcuuuuccuccggucCCCGGCGCGUg -3'
miRNA:   3'- gCGCgCGGUgCUa--CCG--------------GGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 147076 0.67 0.555813
Target:  5'- gCGgGCGCCcgguccaaggACGAaGGCgUCGGCGCcCg -3'
miRNA:   3'- -GCgCGCGG----------UGCUaCCGgGGCCGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.