miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 17665 0.71 0.333983
Target:  5'- cCGC-CGCCAccgcCGccGGCCCCGGCGgagaccgagcCGCa -3'
miRNA:   3'- -GCGcGCGGU----GCuaCCGGGGCCGC----------GCG- -5'
11042 3' -65 NC_002794.1 + 18079 0.66 0.574359
Target:  5'- uGUGCGUguCGGUGGCgCagaaGGCGCcCa -3'
miRNA:   3'- gCGCGCGguGCUACCGgGg---CCGCGcG- -5'
11042 3' -65 NC_002794.1 + 18853 0.71 0.326421
Target:  5'- aGCGCGCCGucgcCGAUcGCCaacgccaccgacgCCGGCGCGg -3'
miRNA:   3'- gCGCGCGGU----GCUAcCGG-------------GGCCGCGCg -5'
11042 3' -65 NC_002794.1 + 19316 0.69 0.424586
Target:  5'- cCGCccaCGCCGCGcUGGCgaCCCG-CGCGCc -3'
miRNA:   3'- -GCGc--GCGGUGCuACCG--GGGCcGCGCG- -5'
11042 3' -65 NC_002794.1 + 19423 0.78 0.109155
Target:  5'- gGCGCGCCcuccuccGCGAccaGGCCCCGaGCGgGCa -3'
miRNA:   3'- gCGCGCGG-------UGCUa--CCGGGGC-CGCgCG- -5'
11042 3' -65 NC_002794.1 + 19512 0.7 0.385067
Target:  5'- gGuCGCGCCGCucgGaGCgCCGGCGCGg -3'
miRNA:   3'- gC-GCGCGGUGcuaC-CGgGGCCGCGCg -5'
11042 3' -65 NC_002794.1 + 21719 0.72 0.2819
Target:  5'- gCGCuGCGUCGCGAUcgcgaGGCCgaagCGGUGCGCc -3'
miRNA:   3'- -GCG-CGCGGUGCUA-----CCGGg---GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 23605 0.66 0.565066
Target:  5'- cCGCcgaccCGaCCcCGcgGGCgCCCGGaCGCGCg -3'
miRNA:   3'- -GCGc----GC-GGuGCuaCCG-GGGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 23691 0.76 0.166679
Target:  5'- -aCGCGCCGcCGA-GGCCCCGaagcgucccgaaccGCGCGCg -3'
miRNA:   3'- gcGCGCGGU-GCUaCCGGGGC--------------CGCGCG- -5'
11042 3' -65 NC_002794.1 + 24056 0.66 0.611824
Target:  5'- cCGCcCGCCcCGGaccacacccgUGcGCCCgGGCGgGCg -3'
miRNA:   3'- -GCGcGCGGuGCU----------AC-CGGGgCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 26074 0.74 0.214682
Target:  5'- cCGCGCacGCCACGcggggcagcgccgacGGCCCCGGCGauCGCc -3'
miRNA:   3'- -GCGCG--CGGUGCua-------------CCGGGGCCGC--GCG- -5'
11042 3' -65 NC_002794.1 + 31498 0.72 0.300001
Target:  5'- uGCGCGUCACGuUGuuccggaaccagaGCUCCGGuUGCGCg -3'
miRNA:   3'- gCGCGCGGUGCuAC-------------CGGGGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 31902 0.66 0.615588
Target:  5'- gGCGCGUCGCuGAUGaGCgCCGacaggacguccagccGCGcCGCa -3'
miRNA:   3'- gCGCGCGGUG-CUAC-CGgGGC---------------CGC-GCG- -5'
11042 3' -65 NC_002794.1 + 32298 0.73 0.231242
Target:  5'- cCGC-CGCCGCGgcGGCCgcgCCGGC-CGCg -3'
miRNA:   3'- -GCGcGCGGUGCuaCCGG---GGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 32576 0.68 0.483756
Target:  5'- uCGCGCGCgGCGGUgccggGGCCggggCCGGgGC-Cg -3'
miRNA:   3'- -GCGCGCGgUGCUA-----CCGG----GGCCgCGcG- -5'
11042 3' -65 NC_002794.1 + 34715 0.72 0.300641
Target:  5'- cCGCcgGCGCCACGA-GGCgCgGGCGgcCGCa -3'
miRNA:   3'- -GCG--CGCGGUGCUaCCGgGgCCGC--GCG- -5'
11042 3' -65 NC_002794.1 + 34779 0.7 0.362552
Target:  5'- cCGCccGCGCCAgccgagucggcCGAaccGGCCCgGGCcGCGCg -3'
miRNA:   3'- -GCG--CGCGGU-----------GCUa--CCGGGgCCG-CGCG- -5'
11042 3' -65 NC_002794.1 + 34860 0.7 0.362552
Target:  5'- gCGgGCGCCGCGGgcGCCgCGGaCGcCGCg -3'
miRNA:   3'- -GCgCGCGGUGCUacCGGgGCC-GC-GCG- -5'
11042 3' -65 NC_002794.1 + 35559 0.75 0.175847
Target:  5'- uCGCGCGCgCGCGugGUGGCCCaGGCGUucuuccGCa -3'
miRNA:   3'- -GCGCGCG-GUGC--UACCGGGgCCGCG------CG- -5'
11042 3' -65 NC_002794.1 + 35833 0.67 0.528341
Target:  5'- cCGC-CGCCACGAac-CCCCGcGCcccGCGCg -3'
miRNA:   3'- -GCGcGCGGUGCUaccGGGGC-CG---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.