miRNA display CGI


Results 41 - 60 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11042 3' -65 NC_002794.1 + 36334 0.73 0.258369
Target:  5'- gGCGCGCaguCGAgcaaCCCGGCGUGCg -3'
miRNA:   3'- gCGCGCGgu-GCUaccgGGGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 37749 0.69 0.424586
Target:  5'- gGCgGCGgCGCGgcGGCgCCGGCGggaGCg -3'
miRNA:   3'- gCG-CGCgGUGCuaCCGgGGCCGCg--CG- -5'
11042 3' -65 NC_002794.1 + 38440 0.71 0.320329
Target:  5'- gGCGgGCCGgacugaggagcCGGcgcGGCCgCGGCGCGCc -3'
miRNA:   3'- gCGCgCGGU-----------GCUa--CCGGgGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 38699 0.74 0.2019
Target:  5'- cCGcCGCGCCGuCGAgcGCCCCGGC-CGCc -3'
miRNA:   3'- -GC-GCGCGGU-GCUacCGGGGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 39649 0.73 0.233321
Target:  5'- uCGC-CGCCugGGUGGUCUucgcccucugccgcgCGGUGCGCu -3'
miRNA:   3'- -GCGcGCGGugCUACCGGG---------------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 41688 0.68 0.474187
Target:  5'- aGCGCccggaccGCCG-GAUcGUCCCgGGCGCGCa -3'
miRNA:   3'- gCGCG-------CGGUgCUAcCGGGG-CCGCGCG- -5'
11042 3' -65 NC_002794.1 + 41910 0.75 0.190221
Target:  5'- aGCGCGCCACGAgccccucgugggccaGCCCgaagugcacgcccuCGGCGUGCg -3'
miRNA:   3'- gCGCGCGGUGCUac-------------CGGG--------------GCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 42054 0.69 0.400581
Target:  5'- gCGCGUGCCAgaUGAuguUGGCCgaCUGGC-CGCg -3'
miRNA:   3'- -GCGCGCGGU--GCU---ACCGG--GGCCGcGCG- -5'
11042 3' -65 NC_002794.1 + 43143 0.71 0.340968
Target:  5'- --aGCGCCACGuu--CCCCaGCGCGCa -3'
miRNA:   3'- gcgCGCGGUGCuaccGGGGcCGCGCG- -5'
11042 3' -65 NC_002794.1 + 43654 0.69 0.431131
Target:  5'- uGC-CGCCgaACGAgccgggcucucgGGCCCgGGCGCGg -3'
miRNA:   3'- gCGcGCGG--UGCUa-----------CCGGGgCCGCGCg -5'
11042 3' -65 NC_002794.1 + 44328 0.66 0.602424
Target:  5'- aGCGCgGCgGCGAagaagacGGCgCCGGCgagaccgagaGCGCg -3'
miRNA:   3'- gCGCG-CGgUGCUa------CCGgGGCCG----------CGCG- -5'
11042 3' -65 NC_002794.1 + 44419 0.66 0.611824
Target:  5'- gGCcgGCGCCGagc-GGCUcgacgacaCCGGCGCGCc -3'
miRNA:   3'- gCG--CGCGGUgcuaCCGG--------GGCCGCGCG- -5'
11042 3' -65 NC_002794.1 + 44537 0.68 0.501386
Target:  5'- aGCGCGCCGuCGuc-GUCgCCGGCG-GCg -3'
miRNA:   3'- gCGCGCGGU-GCuacCGG-GGCCGCgCG- -5'
11042 3' -65 NC_002794.1 + 45424 0.7 0.369954
Target:  5'- cCGCacCGCCGCGAgcgucucgcGGaCCCGGuCGCGCg -3'
miRNA:   3'- -GCGc-GCGGUGCUa--------CCgGGGCC-GCGCG- -5'
11042 3' -65 NC_002794.1 + 46172 0.68 0.457887
Target:  5'- gCGCacaGCGCCGcCGAga-CCCCGGCaccGCGCu -3'
miRNA:   3'- -GCG---CGCGGU-GCUaccGGGGCCG---CGCG- -5'
11042 3' -65 NC_002794.1 + 46314 0.66 0.602424
Target:  5'- aGCGCgGCgGCGAcGGCgCCGuCGcCGCg -3'
miRNA:   3'- gCGCG-CGgUGCUaCCGgGGCcGC-GCG- -5'
11042 3' -65 NC_002794.1 + 46384 0.69 0.400581
Target:  5'- gGCGCGCUACGAcgagcugaaacGGCaCCGGgaaGCGCg -3'
miRNA:   3'- gCGCGCGGUGCUa----------CCGgGGCCg--CGCG- -5'
11042 3' -65 NC_002794.1 + 47944 0.7 0.369954
Target:  5'- uCG-GCGCCGCGc--GUCCCGGCGCcgGCu -3'
miRNA:   3'- -GCgCGCGGUGCuacCGGGGCCGCG--CG- -5'
11042 3' -65 NC_002794.1 + 49013 0.77 0.139037
Target:  5'- -cCGCGCCGCGgcGGCCgCGGCGuCGUc -3'
miRNA:   3'- gcGCGCGGUGCuaCCGGgGCCGC-GCG- -5'
11042 3' -65 NC_002794.1 + 49257 0.7 0.366981
Target:  5'- cCGCGCacCCACGAcgggcgcuccaacGGCCCgGGCGcCGCc -3'
miRNA:   3'- -GCGCGc-GGUGCUa------------CCGGGgCCGC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.